2022-02-02 13:38:21,209 (natcap.invest.utils) utils.prepare_workspace(161) Level 100 Writing log messages to C:\Users\Bruker\OneDrive\ES_run\InVEST_og_QGIS\InVEST_HabitatQuality_kjoringer\Opeland\InVEST-natcap.invest.habitat_quality-log-2022-02-02--13_38_21.txt
2022-02-02 13:38:21,210 (__main__) cli.main(450) Level 100 Starting model with parameters: 
Arguments for InVEST natcap.invest.habitat_quality 3.9.2.post480+gc06f40d7:
access_vector_path       
half_saturation_constant 0.05
lulc_bas_path            
lulc_cur_path            C:\Users\Bruker\OneDrive\ES_run\InVEST_og_QGIS\InVEST_HabitatQuality_kjoringer\Opeland\NatCap_Community_sending\LULC_current_Opeland.tif
lulc_fut_path            
n_workers                -1
results_suffix           
sensitivity_table_path   C:\Users\Bruker\OneDrive\ES_run\InVEST_og_QGIS\InVEST_HabitatQuality_kjoringer\Opeland\NatCap_Community_sending\Sensitivity_table_opeland1.csv
threats_table_path       C:\Users\Bruker\OneDrive\ES_run\InVEST_og_QGIS\InVEST_HabitatQuality_kjoringer\Opeland\NatCap_Community_sending\Threats_table_opeland.csv
workspace_dir            C:\Users\Bruker\OneDrive\ES_run\InVEST_og_QGIS\InVEST_HabitatQuality_kjoringer\Opeland

2022-02-02 13:38:21,219 (natcap.invest.habitat_quality) habitat_quality.execute(250) INFO Starting execute of Habitat Quality model.
2022-02-02 13:38:21,220 (natcap.invest.habitat_quality) habitat_quality.execute(256) INFO Creating workspace
2022-02-02 13:38:21,236 (natcap.invest.habitat_quality) habitat_quality.execute(269) INFO Checking Threat and Sensitivity tables for compliance
2022-02-02 13:38:21,248 (natcap.invest.utils) utils.build_lookup_from_csv(569) WARNING Empty or NaN values were found in the table: C:\Users\Bruker\OneDrive\ES_run\InVEST_og_QGIS\InVEST_HabitatQuality_kjoringer\Opeland\NatCap_Community_sending\Threats_table_opeland.csv.
2022-02-02 13:38:21,259 (natcap.invest.habitat_quality) habitat_quality.execute(296) INFO Validate threat rasters and collect unique LULC codes
2022-02-02 13:38:21,310 (natcap.invest.habitat_quality) habitat_quality._raster_values_in_bounds(977) WARNING Raster has undefined NODATA value for C:\Users\Bruker\OneDrive\ES_run\InVEST_og_QGIS\InVEST_HabitatQuality_kjoringer\Opeland\NatCap_Community_sending\opeland_crops_c.tif.
2022-02-02 13:38:21,386 (natcap.invest.habitat_quality) habitat_quality.execute(360) INFO Checking threat raster values are valid ( 0 <= x <= 1 ).
2022-02-02 13:38:21,386 (natcap.invest.habitat_quality) habitat_quality.execute(371) INFO Aligning and resizing land cover and threat rasters
2022-02-02 13:38:21,457 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(824) INFO 1 of 2 aligned: LULC_current_Opeland_aligned.tif
2022-02-02 13:38:21,473 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(824) INFO 2 of 2 aligned: opeland_crops_c_aligned.tif
2022-02-02 13:38:21,473 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(828) INFO aligned all 2 rasters.
2022-02-02 13:38:21,491 (natcap.invest.habitat_quality) habitat_quality.execute(424) INFO Starting habitat_quality biophysical calculations
2022-02-02 13:38:21,529 (natcap.invest.habitat_quality) habitat_quality.execute(468) INFO Calculating habitat quality for landuse: C:\Users\Bruker\OneDrive\ES_run\InVEST_og_QGIS\InVEST_HabitatQuality_kjoringer\Opeland\intermediate\LULC_current_Opeland_aligned.tif
2022-02-02 13:38:21,590 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker
2022-02-02 13:38:21,596 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker <Thread(Thread-1, started daemon 1800)>
2022-02-02 13:38:21,602 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete
2022-02-02 13:38:21,603 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result.
2022-02-02 13:38:21,828 (taskgraph.Task) Task.add_task(706) ERROR Something went wrong when adding task convolve_linear_c_crops (5), terminating taskgraph.
Traceback (most recent call last):
  File "taskgraph\Task.py", line 674, in add_task
  File "taskgraph\Task.py", line 1093, in _call
  File "pygeoprocessing\geoprocessing.py", line 2636, in convolve_2d
ValueError: ('C:\\Users\\Bruker\\OneDrive\\ES_run\\InVEST_og_QGIS\\InVEST_HabitatQuality_kjoringer\\Opeland\\intermediate\\opeland_crops_c_aligned.tif', 1) has a row blocksize which can make this function run very slow, create a square blocksize using `warp_raster` or `align_and_resize_raster_stack` which creates square blocksizes by default
2022-02-02 13:38:21,829 (natcap.invest.utils) utils.prepare_workspace(166) ERROR Exception while executing natcap.invest.habitat_quality
Traceback (most recent call last):
  File "natcap\invest\utils.py", line 164, in prepare_workspace
  File "natcap\invest\cli.py", line 461, in main
  File "natcap\invest\habitat_quality.py", line 539, in execute
  File "taskgraph\Task.py", line 674, in add_task
  File "taskgraph\Task.py", line 1093, in _call
  File "pygeoprocessing\geoprocessing.py", line 2636, in convolve_2d
ValueError: ('C:\\Users\\Bruker\\OneDrive\\ES_run\\InVEST_og_QGIS\\InVEST_HabitatQuality_kjoringer\\Opeland\\intermediate\\opeland_crops_c_aligned.tif', 1) has a row blocksize which can make this function run very slow, create a square blocksize using `warp_raster` or `align_and_resize_raster_stack` which creates square blocksizes by default
2022-02-02 13:38:21,831 (natcap.invest.utils) utils.prepare_workspace(169) INFO Elapsed time: 0.62s
2022-02-02 13:38:21,831 (natcap.invest.utils) utils.prepare_workspace(172) INFO Execution finished