Arguments:
half_saturation_constant 0.5
landuse_cur_uri          C:/Users/user/Desktop/HQ/input/CUS50m_hab.tif
sensitivity_uri          C:/Users/user/Desktop/HQ/input/sens.csv
threat_raster_folder     C:\Users\user\Desktop\HQ\input\minacce
threats_uri              C:/Users/user/Desktop/HQ/input/Minacce.csv
workspace_dir            C:\Users\user\Desktop\HQ\output


06/19/2019 11:44:46  root               INFO     Logging will be saved to natcap.invest.habitat_quality-log-2019-06-19--11_44_46.txt
06/19/2019 11:44:46  root               DEBUG    Loaded the model from natcap.invest.habitat_quality
06/19/2019 11:44:46  root               INFO     Executing the loaded model
06/19/2019 11:44:46  root               INFO     Running InVEST version "3.3.3"
06/19/2019 11:44:46  root               INFO     Python architecture: ('32bit', 'WindowsPE')
06/19/2019 11:44:46  root               INFO     Disk space remaining for workspace: 76.49 GB
06/19/2019 11:44:46  root               INFO     Pointing temporary directory at the workspace at C:\Users\user\Desktop\HQ\output
06/19/2019 11:44:46  root               INFO     Starting natcap.invest.habitat_quality
06/19/2019 11:44:47  root               INFO     Setting tempfile.tempdir to C:\Users\user\Desktop\HQ\output\tmp
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    Starting habitat_quality biophysical calculations
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    Handling Access Shape
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    No Access Shape Provided, access raster filled with 1s.
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    landuse_uri_dict : {'_c': u'C:/Users/user/Desktop/HQ/input/CUS50m_hab.tif'}
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    Calculating results for landuse : _c
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:44:47  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    Calculating threat : est
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.03, u'WEIGHT': 0.3, u'THREAT': u'est', u'DECAY': u'exponential'}
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\est_c.tif
06/19/2019 11:44:47  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:44:47  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.646243462071986
 DESIRED: 5.340522857975488
06/19/2019 11:44:47  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 6.007951
06/19/2019 11:44:47  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:44:49  natcap.invest.iui._log_model WARNING  an exception encountered when logging cannot connect: [Errno 10061] Impossibile stabilire la connessione. Rifiuto persistente del computer di destinazione
06/19/2019 11:45:21  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:45:21  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:45:22  natcap.invest.habitat_quality DEBUG    Calculating threat : serr
06/19/2019 11:45:22  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.03, u'WEIGHT': 1, u'THREAT': u'serr', u'DECAY': u'exponential'}
06/19/2019 11:45:22  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\serr_c.tif
06/19/2019 11:45:22  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:45:22  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.6461705193960885
 DESIRED: 5.340065721794648
06/19/2019 11:45:22  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 6.008270
06/19/2019 11:45:22  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:45:57  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:45:57  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:45:57  natcap.invest.habitat_quality DEBUG    Calculating threat : zvn
06/19/2019 11:45:57  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0, u'WEIGHT': 0.25, u'THREAT': u'zvn', u'DECAY': u'exponential'}
06/19/2019 11:45:57  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\zvn_c.tif
06/19/2019 11:45:57  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:45:57  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.6461705193960885
 DESIRED: 5.340065721794648
06/19/2019 11:45:57  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 0.000000
C:\INVEST~1.3_X\INVEST~1\natcap\invest\utils.py:111: RuntimeWarning: invalid value encountered in divide
06/19/2019 11:45:58  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:46:19  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:46:19  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:46:20  natcap.invest.habitat_quality DEBUG    Calculating threat : int
06/19/2019 11:46:20  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.03, u'WEIGHT': 0.7, u'THREAT': u'int', u'DECAY': u'exponential'}
06/19/2019 11:46:20  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\int_c.tif
06/19/2019 11:46:20  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:46:20  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.6461705193960885
 DESIRED: 5.340065721794648
06/19/2019 11:46:20  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 6.008270
06/19/2019 11:46:20  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:46:55  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:46:55  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:46:55  natcap.invest.habitat_quality DEBUG    Calculating threat : urbcon
06/19/2019 11:46:55  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.1, u'WEIGHT': 1, u'THREAT': u'urbcon', u'DECAY': u'exponential'}
06/19/2019 11:46:55  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\urbcon_c.tif
06/19/2019 11:46:55  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:46:55  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.6461705193960885
 DESIRED: 5.340065721794648
06/19/2019 11:46:55  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 20.027565
06/19/2019 11:46:56  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:48:07  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:48:07  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:48:07  natcap.invest.habitat_quality DEBUG    Calculating threat : urbdis
06/19/2019 11:48:07  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.05, u'WEIGHT': 0.7, u'THREAT': u'urbdis', u'DECAY': u'exponential'}
06/19/2019 11:48:07  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\urbdis_c.tif
06/19/2019 11:48:07  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:48:07  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.6461705193960885
 DESIRED: 5.340065721794648
06/19/2019 11:48:07  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 10.013783
06/19/2019 11:48:08  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:48:55  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:48:55  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:48:55  natcap.invest.habitat_quality DEBUG    Calculating threat : long
06/19/2019 11:48:55  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.05, u'WEIGHT': 1, u'THREAT': u'long', u'DECAY': u'exponential'}
06/19/2019 11:48:55  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\long_c.tif
06/19/2019 11:48:55  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:48:55  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.6461705193960885
 DESIRED: 5.340065721794648
06/19/2019 11:48:55  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 10.013783
06/19/2019 11:48:56  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:49:41  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:49:41  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:49:41  natcap.invest.habitat_quality DEBUG    Calculating threat : migl
06/19/2019 11:49:41  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.025, u'WEIGHT': 0.7, u'THREAT': u'migl', u'DECAY': u'exponential'}
06/19/2019 11:49:41  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\migl_c.tif
06/19/2019 11:49:41  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:49:41  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.6461705193960885
 DESIRED: 5.340065721794648
06/19/2019 11:49:41  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 5.006891
06/19/2019 11:49:42  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:50:16  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:50:16  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:50:16  natcap.invest.habitat_quality DEBUG    Calculating threat : ferr
06/19/2019 11:50:16  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.05, u'WEIGHT': 1, u'THREAT': u'ferr', u'DECAY': u'exponential'}
06/19/2019 11:50:16  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\ferr_c.tif
06/19/2019 11:50:16  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:50:16  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 5.001306611039791
 DESIRED: 5.001550309295787
06/19/2019 11:50:16  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 9.997144
06/19/2019 11:50:17  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:51:09  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:51:09  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:51:09  natcap.invest.habitat_quality DEBUG    Calculating threat : princ
06/19/2019 11:51:09  natcap.invest.habitat_quality DEBUG    Threat Data : {u'MAX_DIST': 0.05, u'WEIGHT': 1, u'THREAT': u'princ', u'DECAY': u'exponential'}
06/19/2019 11:51:09  natcap.invest.habitat_quality DEBUG    threat_dataset_uri C:\Users\user\Desktop\HQ\input\minacce\princ_c.tif
06/19/2019 11:51:09  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:51:09  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 4.6461705193960885
 DESIRED: 5.340065721794648
06/19/2019 11:51:09  natcap.invest.habitat_quality DEBUG    Max distance in pixels: 10.013783
06/19/2019 11:51:10  pygeoprocessing.geoprocessing INFO     starting convolve
06/19/2019 11:51:56  natcap.invest.habitat_quality DEBUG    Starting map_raster_to_dict_values
06/19/2019 11:51:56  pygeoprocessing.geoprocessing WARNING  
Items are not equal to 7 significant digits:
 ACTUAL: 46.45352131386855
 DESIRED: 53.398346213592234
06/19/2019 11:51:56  natcap.invest.habitat_quality DEBUG    Starting vectorize on total_degradation
06/19/2019 11:52:01  pygeoprocessing.geoprocessing INFO     align_dataset_list aligning dataset 3 of 21
06/19/2019 11:52:11  pygeoprocessing.geoprocessing INFO     ReprojectImage 32.0% complete C:\Users\user\Desktop\HQ\output\tmp\tmpedox_p.tif, psz_message 
06/19/2019 11:52:19  pygeoprocessing.geoprocessing INFO     ReprojectImage 63.0% complete C:\Users\user\Desktop\HQ\output\tmp\tmpedox_p.tif, psz_message 
06/19/2019 11:52:26  pygeoprocessing.geoprocessing INFO     ReprojectImage 94.0% complete C:\Users\user\Desktop\HQ\output\tmp\tmpedox_p.tif, psz_message 
06/19/2019 11:52:26  pygeoprocessing.geoprocessing INFO     ReprojectImage 100.0% complete C:\Users\user\Desktop\HQ\output\tmp\tmpedox_p.tif, psz_message 
06/19/2019 11:52:26  osgeo.gdal         ERROR    [errno 1] C:\Users\user\Desktop\HQ\output\tmp\tmpedox_p.tif, band 1: Failed to compute statistics, no valid pixels found in sampling.
06/19/2019 11:52:26  pygeoprocessing.geoprocessing INFO     align_dataset_list aligning dataset 5 of 21
06/19/2019 11:52:31  pygeoprocessing.geoprocessing INFO     align_dataset_list aligning dataset 9 of 21
06/19/2019 11:52:36  pygeoprocessing.geoprocessing INFO     align_dataset_list aligning dataset 13 of 21
06/19/2019 11:52:42  pygeoprocessing.geoprocessing INFO     align_dataset_list aligning dataset 17 of 21
06/19/2019 11:52:45  natcap.invest.habitat_quality DEBUG    Finished vectorize on total_degradation
06/19/2019 11:52:45  natcap.invest.habitat_quality DEBUG    Starting vectorize on quality_op
C:\INVEST~1.3_X\INVEST~1\natcap\invest\habitat_quality.py:357: RuntimeWarning: invalid value encountered in less
06/19/2019 11:52:46  natcap.invest.habitat_quality DEBUG    Finished vectorize on quality_op
06/19/2019 11:52:46  natcap.invest.habitat_quality INFO     Baseline not provided to compute Rarity
06/19/2019 11:52:46  natcap.invest.habitat_quality DEBUG    Finished habitat_quality biophysical calculations
06/19/2019 11:52:46  root               INFO     Resetting tempfile.tempdir to c:\users\user\appdata\local\temp
06/19/2019 11:52:46  root               INFO     Opening file explorer to workspace directory
06/19/2019 11:52:46  root               INFO     Using windows explorer to view files
06/19/2019 11:52:46  root               INFO     Disk space free: 70.65 GB
06/19/2019 11:52:47  natcap.invest.iui.executor._log_exit_status WARNING  an exception encountered when _log_exit_status cannot connect: [Errno 10061] Impossibile stabilire la connessione. Rifiuto persistente del computer di destinazione
06/19/2019 11:52:47  root               INFO     Elapsed time: 7m 59.15s
06/19/2019 11:52:47  root               INFO     Finished.