2022-08-29 19:57:40,842 (natcap.invest.utils) utils.prepare_workspace(162) Level 100 Writing log messages to [C:\Desktop\PBC 499 GIS\InVEST-natcap.invest.habitat_quality-log-2022-08-29--19_57_40.txt] 2022-08-29 19:57:40,842 (__main__) cli.main(475) Level 100 Starting model with parameters: Arguments for InVEST natcap.invest.habitat_quality 3.11.0: access_vector_path half_saturation_constant .50 lulc_bas_path lulc_cur_path C:\Desktop\PBC 499 GIS\LULC_C.tif lulc_fut_path n_workers -1 results_suffix OUTPUT8_29 sensitivity_table_path C:\Desktop\PBC 499 GIS\Threats\sensitivity.csv threats_table_path C:\Desktop\PBC 499 GIS\Threats\threat.csv workspace_dir C:\Desktop\PBC 499 GIS 2022-08-29 19:57:40,842 (natcap.invest.habitat_quality) habitat_quality.execute(261) INFO Starting execute of Habitat Quality model. 2022-08-29 19:57:40,842 (natcap.invest.habitat_quality) habitat_quality.execute(267) INFO Creating workspace 2022-08-29 19:57:40,853 (natcap.invest.habitat_quality) habitat_quality.execute(280) INFO Checking Threat and Sensitivity tables for compliance 2022-08-29 19:57:40,860 (natcap.invest.utils) utils.build_lookup_from_csv(570) WARNING Empty or NaN values were found in the table: C:\Desktop\PBC 499 GIS\Threats\threat.csv. 2022-08-29 19:57:40,867 (natcap.invest.habitat_quality) habitat_quality.execute(307) INFO Validate threat rasters and collect unique LULC codes 2022-08-29 19:57:42,110 (natcap.invest.habitat_quality) habitat_quality.execute(369) INFO Checking threat raster values are valid ( 0 <= x <= 1 ). 2022-08-29 19:57:42,110 (natcap.invest.habitat_quality) habitat_quality.execute(380) INFO Aligning and resizing land cover and threat rasters 2022-08-29 19:57:46,062 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(824) INFO 1 of 3 aligned: LULC_C_aligned_OUTPUT8_29.tif 2022-08-29 19:57:46,084 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(824) INFO 2 of 3 aligned: pwrline_c_aligned_OUTPUT8_29.tif 2022-08-29 19:57:48,840 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(824) INFO 3 of 3 aligned: roads_c_aligned_OUTPUT8_29.tif 2022-08-29 19:57:48,840 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(828) INFO aligned all 3 rasters. 2022-08-29 19:57:48,847 (natcap.invest.habitat_quality) habitat_quality.execute(433) INFO Starting habitat_quality biophysical calculations 2022-08-29 19:57:51,076 (natcap.invest.habitat_quality) habitat_quality.execute(477) INFO Calculating habitat quality for landuse: C:\Desktop\PBC 499 GIS\intermediate\LULC_C_aligned_OUTPUT8_29.tif 2022-08-29 19:57:51,098 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker 2022-08-29 19:57:51,100 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker 2022-08-29 19:57:56,093 (pygeoprocessing.geoprocessing) geoprocessing.(477) INFO 97.6% complete 2022-08-29 19:57:56,235 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete 2022-08-29 19:57:56,235 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result. 2022-08-29 19:57:57,696 (py.warnings) warnings._showwarnmsg(109) WARNING natcap\invest\utils.py:415: RuntimeWarning: invalid value encountered in true_divide 2022-08-29 19:57:57,734 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2678) INFO starting convolve 2022-08-29 19:57:57,737 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2726) INFO 2576 sent to workers, wait for worker results 2022-08-29 19:58:02,737 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 43.2% complete on filtered_l_pwrline_c_OUTPUT8_29.tif 2022-08-29 19:58:07,738 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 83.2% complete on filtered_l_pwrline_c_OUTPUT8_29.tif 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complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:06:19,585 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 70.2% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:06:24,594 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 70.9% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:06:29,608 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 71.5% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:06:34,620 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 72.2% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:06:39,638 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 72.9% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:06:44,649 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 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worker approximately 81.5% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:07:49,743 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 82.1% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:07:54,748 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 82.8% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:07:59,752 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 83.5% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:04,752 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 84.1% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:09,752 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 84.8% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:14,759 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 85.4% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:19,772 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 86.1% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:24,776 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 86.7% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:29,796 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 87.4% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:34,801 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 88.1% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:39,818 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 88.7% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:44,821 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 89.4% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:49,835 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 90.0% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:54,849 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 90.7% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:08:59,851 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 91.3% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:04,868 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 92.0% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:09,879 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 92.6% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:14,887 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 93.3% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:19,899 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 93.9% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:24,911 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 94.6% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:29,921 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 95.2% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:34,935 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 95.8% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:39,947 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 96.5% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:44,964 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 97.2% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:49,967 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 97.8% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:54,979 (pygeoprocessing.geoprocessing) geoprocessing.(2786) INFO convolution worker approximately 98.5% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:09:58,499 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2792) INFO convolution worker 100.0% complete on filtered_l_roads_c_OUTPUT8_29.tif 2022-08-29 20:10:01,800 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker 2022-08-29 20:10:01,801 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker 2022-08-29 20:10:06,796 (pygeoprocessing.geoprocessing) geoprocessing.(477) INFO 89.9% complete 2022-08-29 20:10:07,444 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete 2022-08-29 20:10:07,445 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result. 2022-08-29 20:10:09,136 (natcap.invest.habitat_quality) habitat_quality.execute(611) INFO Starting raster calculation on total degradation 2022-08-29 20:10:09,163 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker 2022-08-29 20:10:09,164 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker 2022-08-29 20:10:14,165 (pygeoprocessing.geoprocessing) geoprocessing.(477) INFO 22.1% complete 2022-08-29 20:10:19,170 (pygeoprocessing.geoprocessing) geoprocessing.(477) INFO 47.2% complete 2022-08-29 20:10:24,170 (pygeoprocessing.geoprocessing) geoprocessing.(477) INFO 73.3% complete 2022-08-29 20:10:29,172 (pygeoprocessing.geoprocessing) geoprocessing.(477) INFO 99.8% complete 2022-08-29 20:10:29,222 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete 2022-08-29 20:10:29,222 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result. 2022-08-29 20:10:29,594 (natcap.invest.habitat_quality) habitat_quality.execute(629) INFO Starting raster calculation on quality 2022-08-29 20:10:29,619 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker 2022-08-29 20:10:29,620 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker 2022-08-29 20:10:34,615 (pygeoprocessing.geoprocessing) geoprocessing.(477) INFO 62.1% complete 2022-08-29 20:10:37,762 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete 2022-08-29 20:10:37,762 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result. 2022-08-29 20:10:38,638 (natcap.invest.habitat_quality) habitat_quality.execute(642) INFO Baseline not provided to compute Rarity 2022-08-29 20:10:38,638 (natcap.invest.habitat_quality) habitat_quality.execute(669) INFO Habitat Quality Model complete. 2022-08-29 20:10:38,638 (natcap.invest.utils) utils.prepare_workspace(170) INFO Elapsed time: 12m 57.799999999999955s 2022-08-29 20:10:38,639 (natcap.invest.utils) utils.prepare_workspace(173) INFO Execution finished