2020-03-03 23:04:13,218 utils.prepare_workspace(115) INFO Writing log messages to G:/PrairieSDMN/Others\InVEST-Habitat-Quality-log-2020-03-03--23_04_12.txt
2020-03-03 23:04:13,367 model._logged_target(1642) Level 100 Starting model with parameters: 
Arguments for InVEST natcap.invest.habitat_quality 3.8.0:
half_saturation_constant 0.5
lulc_bas_path            G:/PrairieSDMN/Threats/NLCD2001.tif
lulc_cur_path            G:/PrairieSDMN/Threats/NLCD2011.tif
lulc_fut_path            G:/PrairieSDMN/Threats/NLCD2016.tif
n_workers                -1
results_suffix           
sensitivity_table_path   G:/PrairieSDMN/Threats/sensitivity_willamette.csv
threat_raster_folder     G:/PrairieSDMN/Threats
threats_table_path       G:/PrairieSDMN/Threats/threats_willamette.csv
workspace_dir            G:/PrairieSDMN/Others

2020-03-03 23:04:21,003 habitat_quality.execute(366) INFO Starting aligning and resizing land cover and threat rasters
2020-03-03 23:04:21,117 geoprocessing.align_and_resize_raster_stack(646) DEBUG assuming manual bounding box mode of [-171683.53342133499, 2277545.449147326, 94506.46657866501, 2556065.449147326]
2020-03-03 23:04:26,357 geoprocessing.align_and_resize_raster_stack(752) INFO 1 of 13 aligned: NLCD2011_aligned.tif
2020-03-03 23:04:31,029 geoprocessing.align_and_resize_raster_stack(752) INFO 2 of 13 aligned: agriculture_c_aligned.tif
2020-03-03 23:04:35,266 geoprocessing.align_and_resize_raster_stack(752) INFO 3 of 13 aligned: railroad_c_aligned.tif
2020-03-03 23:04:39,313 geoprocessing.align_and_resize_raster_stack(752) INFO 4 of 13 aligned: urban_c_aligned.tif
2020-03-03 23:04:43,259 geoprocessing.align_and_resize_raster_stack(752) INFO 5 of 13 aligned: barren_c_aligned.tif
2020-03-03 23:04:47,492 geoprocessing.align_and_resize_raster_stack(752) INFO 6 of 13 aligned: roads_c_aligned.tif
2020-03-03 23:04:52,713 geoprocessing.align_and_resize_raster_stack(752) INFO 7 of 13 aligned: NLCD2016_aligned.tif
2020-03-03 23:04:57,341 geoprocessing.align_and_resize_raster_stack(752) INFO 8 of 13 aligned: agriculture_f_aligned.tif
2020-03-03 23:05:03,123 geoprocessing.logger_callback(3239) INFO Warp 76.0% complete G:/PrairieSDMN/Others\intermediate\railroad_f_aligned.tif
2020-03-03 23:05:04,834 geoprocessing.logger_callback(3239) INFO Warp 100.0% complete G:/PrairieSDMN/Others\intermediate\railroad_f_aligned.tif
2020-03-03 23:05:05,237 geoprocessing.align_and_resize_raster_stack(752) INFO 9 of 13 aligned: railroad_f_aligned.tif
2020-03-03 23:05:09,410 geoprocessing.align_and_resize_raster_stack(752) INFO 10 of 13 aligned: urban_f_aligned.tif
2020-03-03 23:05:13,578 geoprocessing.align_and_resize_raster_stack(752) INFO 11 of 13 aligned: barren_f_aligned.tif
2020-03-03 23:05:18,002 geoprocessing.align_and_resize_raster_stack(752) INFO 12 of 13 aligned: roads_f_aligned.tif
2020-03-03 23:05:23,071 geoprocessing.align_and_resize_raster_stack(752) INFO 13 of 13 aligned: NLCD2001_aligned.tif
2020-03-03 23:05:23,072 geoprocessing.align_and_resize_raster_stack(754) INFO aligned all 13 rasters.
2020-03-03 23:05:23,072 habitat_quality.execute(381) INFO Finished aligning and resizing land cover and threat rasters
2020-03-03 23:05:23,072 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\agriculture_c_aligned.tif
2020-03-03 23:05:26,985 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\railroad_c_aligned.tif
2020-03-03 23:05:32,445 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\urban_c_aligned.tif
2020-03-03 23:05:36,237 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\barren_c_aligned.tif
2020-03-03 23:05:40,692 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\roads_c_aligned.tif
2020-03-03 23:05:44,495 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\agriculture_f_aligned.tif
2020-03-03 23:05:48,341 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\railroad_f_aligned.tif
2020-03-03 23:05:53,862 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\urban_f_aligned.tif
2020-03-03 23:05:57,642 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\barren_f_aligned.tif
2020-03-03 23:06:01,557 habitat_quality.execute(402) INFO Preprocessing threat values for G:/PrairieSDMN/Others\intermediate\roads_f_aligned.tif
2020-03-03 23:06:05,305 habitat_quality.execute(427) INFO Starting habitat_quality biophysical calculations
2020-03-03 23:06:05,305 habitat_quality.execute(434) INFO Handling Access Shape
2020-03-03 23:06:07,797 habitat_quality.execute(447) INFO No Access Shape Provided, access raster filled with 1s.
2020-03-03 23:06:07,797 habitat_quality.execute(455) DEBUG lulc_path_dict : {'_c': 'G:/PrairieSDMN/Others\\intermediate\\NLCD2011_aligned.tif', '_f': 'G:/PrairieSDMN/Others\\intermediate\\NLCD2016_aligned.tif', '_b': 'G:/PrairieSDMN/Others\\intermediate\\NLCD2001_aligned.tif'}
2020-03-03 23:06:07,797 habitat_quality.execute(459) INFO Calculating habitat quality for landuse: G:/PrairieSDMN/Others\intermediate\NLCD2011_aligned.tif
2020-03-03 23:06:07,798 habitat_quality.map_raster_to_dict_values(847) INFO Starting map_raster_to_dict_values
2020-03-03 23:06:07,805 geoprocessing.raster_calculator(375) INFO starting stats_worker
2020-03-03 23:06:07,806 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-2, started daemon 8616)>
2020-03-03 23:06:07,934 threading.run(870) DEBUG payload is None, terminating
2020-03-03 23:06:07,934 geoprocessing.raster_calculator(486) INFO Waiting for raster stats worker result.
2020-03-03 23:06:07,935 threading.run(870) WARNING No valid pixels were received, sending None.
2020-03-03 23:06:07,935 model._logged_target(1648) ERROR Exception while executing <function execute at 0x0AB7BAE0>
Traceback (most recent call last):
  File "site-packages\natcap\invest\ui\model.py", line 1645, in _logged_target
  File "site-packages\natcap\invest\habitat_quality.py", line 466, in execute
  File "site-packages\natcap\invest\habitat_quality.py", line 854, in map_raster_to_dict_values
  File "site-packages\pygeoprocessing\geoprocessing.py", line 1763, in reclassify_raster
  File "site-packages\pygeoprocessing\geoprocessing.py", line 424, in raster_calculator
  File "site-packages\pygeoprocessing\geoprocessing.py", line 1758, in _map_dataset_to_value_op
IndexError: index 16 is out of bounds for axis 0 with size 16
2020-03-03 23:06:07,938 model._logged_target(1651) INFO Execution finished
2020-03-03 23:06:07,940 utils.prepare_workspace(121) INFO Elapsed time: 1m 54.72s