2023-09-29 11:27:19,099 (natcap.invest.utils) utils.prepare_workspace(161) Level 100 Writing log messages to [E:\StudyThing2\START\Road_impact\23.9.29_3km\InVEST-natcap.invest.habitat_quality-log-2023-09-29--11_27_19.txt]
2023-09-29 11:27:19,099 (__main__) cli.main(475) Level 100 Starting model with parameters: 
Arguments for InVEST natcap.invest.habitat_quality 3.12.0:
access_vector_path       
half_saturation_constant 0.05
lulc_bas_path            
lulc_cur_path            E:\StudyThing2\START\Road_impact\23.9.29_3km\2013_11N+r.tif
lulc_fut_path            
n_workers                -1
results_suffix           3km
sensitivity_table_path   E:\StudyThing2\START\Road_impact\23.9.29_3km\Sensitivity.csv
threats_table_path       E:\StudyThing2\START\Road_impact\23.9.29_3km\Threat.csv
workspace_dir            E:\StudyThing2\START\Road_impact\23.9.29_3km

2023-09-29 11:27:19,101 (natcap.invest.habitat_quality) habitat_quality.execute(261) INFO Starting execute of Habitat Quality model.
2023-09-29 11:27:19,101 (natcap.invest.habitat_quality) habitat_quality.execute(267) INFO Creating workspace
2023-09-29 11:27:19,113 (natcap.invest.habitat_quality) habitat_quality.execute(280) INFO Checking Threat and Sensitivity tables for compliance
2023-09-29 11:27:19,119 (natcap.invest.utils) utils.build_lookup_from_csv(569) WARNING Empty or NaN values were found in the table: E:\StudyThing2\START\Road_impact\23.9.29_3km\Threat.csv.
2023-09-29 11:27:19,125 (natcap.invest.utils) utils.build_lookup_from_csv(569) WARNING Empty or NaN values were found in the table: E:\StudyThing2\START\Road_impact\23.9.29_3km\Sensitivity.csv.
2023-09-29 11:27:19,126 (natcap.invest.utils) utils.build_lookup_from_csv(576) WARNING Encountered an entirely blank row on line(s) [nan]. Dropping rows from table.
2023-09-29 11:27:19,129 (natcap.invest.habitat_quality) habitat_quality.execute(307) INFO Validate threat rasters and collect unique LULC codes
2023-09-29 11:27:19,314 (natcap.invest.habitat_quality) habitat_quality.execute(369) INFO Checking threat raster values are valid ( 0 <= x <= 1 ).
2023-09-29 11:27:19,314 (natcap.invest.habitat_quality) habitat_quality.execute(380) INFO Aligning and resizing land cover and threat rasters
2023-09-29 11:27:20,494 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(824) INFO 1 of 2 aligned: 2013_11N+r_aligned_3km.tif
2023-09-29 11:27:21,490 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(824) INFO 2 of 2 aligned: road_c_aligned_3km.tif
2023-09-29 11:27:21,490 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(828) INFO aligned all 2 rasters.
2023-09-29 11:27:21,496 (natcap.invest.habitat_quality) habitat_quality.execute(433) INFO Starting habitat_quality biophysical calculations
2023-09-29 11:27:22,305 (natcap.invest.habitat_quality) habitat_quality.execute(477) INFO Calculating habitat quality for landuse: E:\StudyThing2\START\Road_impact\23.9.29_3km\intermediate\2013_11N+r_aligned_3km.tif
2023-09-29 11:27:22,324 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker
2023-09-29 11:27:22,324 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker <Thread(Thread-1 (stats_worker), started daemon 86536)>
2023-09-29 11:27:23,619 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete
2023-09-29 11:27:23,619 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result.
2023-09-29 11:27:24,401 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2681) INFO starting convolve
2023-09-29 11:27:24,403 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2729) INFO 1134 sent to workers, wait for worker results
2023-09-29 11:27:29,403 (pygeoprocessing.geoprocessing) geoprocessing.<lambda>(2789) INFO convolution worker approximately 97.6% complete on filtered_road_c_3km.tif
2023-09-29 11:27:29,526 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2795) INFO convolution worker 100.0% complete on filtered_road_c_3km.tif
2023-09-29 11:27:31,135 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker
2023-09-29 11:27:31,136 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker <Thread(Thread-4 (stats_worker), started daemon 70708)>
2023-09-29 11:27:32,579 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete
2023-09-29 11:27:32,580 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result.
2023-09-29 11:27:33,367 (natcap.invest.habitat_quality) habitat_quality.execute(611) INFO Starting raster calculation on total degradation
2023-09-29 11:27:33,388 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker
2023-09-29 11:27:33,389 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker <Thread(Thread-5 (stats_worker), started daemon 57888)>
2023-09-29 11:27:36,729 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete
2023-09-29 11:27:36,729 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result.
2023-09-29 11:27:37,659 (natcap.invest.habitat_quality) habitat_quality.execute(629) INFO Starting raster calculation on quality
2023-09-29 11:27:37,676 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(396) INFO starting stats_worker
2023-09-29 11:27:37,677 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(402) INFO started stats_worker <Thread(Thread-6 (stats_worker), started daemon 88020)>
2023-09-29 11:27:40,798 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(482) INFO 100.0% complete
2023-09-29 11:27:40,798 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(485) INFO Waiting for raster stats worker result.
2023-09-29 11:27:41,680 (natcap.invest.habitat_quality) habitat_quality.execute(642) INFO Baseline not provided to compute Rarity
2023-09-29 11:27:41,680 (natcap.invest.habitat_quality) habitat_quality.execute(669) INFO Habitat Quality Model complete.
2023-09-29 11:27:41,681 (natcap.invest.utils) utils.prepare_workspace(169) INFO Elapsed time: 22.58s
2023-09-29 11:27:41,681 (natcap.invest.utils) utils.prepare_workspace(172) INFO Execution finished