2023-03-22 07:38:24,676 (natcap.invest.utils) utils.prepare_workspace(173) Level 100 Writing log messages to [C:\Users\Sibylle Stöckli\Desktop\InVEST\InVEST_output\intermediate_outputs\InVEST-natcap.invest.pollination-log-2023-03-22--07_38_24.txt] 2023-03-22 07:38:24,676 (__main__) cli.main(458) Level 100 Starting model with parameters: Arguments for InVEST natcap.invest.pollination 3.12.1.post661+g3c399caae: farm_vector_path C:\Users\Sibylle Stöckli\Desktop\InVEST\InVEST_Sampledata\pollination\farms.shp guild_table_path C:\Users\Sibylle Stöckli\Desktop\InVEST\InVEST_Sampledata\pollination\guild_table.csv landcover_biophysical_table_path C:\Users\Sibylle Stöckli\Desktop\InVEST\InVEST_Sampledata\pollination\landcover_biophysical_table.csv landcover_raster_path C:\Users\Sibylle Stöckli\Desktop\InVEST\InVEST_Sampledata\pollination\landcover.tif n_workers -1 results_suffix workspace_dir C:\Users\Sibylle Stöckli\Desktop\InVEST\InVEST_output\intermediate_outputs 2023-03-22 07:38:24,676 (__main__) cli.main(466) INFO #1167 FS Encoding: utf-8 2023-03-22 07:38:24,678 (__main__) cli.main(472) INFO #1167 What chardet thinks: f{'encoding': 'ascii', 'confidence': 1.0, 'language': ''} 2023-03-22 07:38:24,690 (natcap.invest.pollination) pollination._parse_scenario_variables(1186) INFO Checking to make sure guild table has all expected headers 2023-03-22 07:38:24,699 (natcap.invest.pollination) pollination._parse_scenario_variables(1227) INFO Checking that farm polygon has expected headers 2023-03-22 07:38:24,777 (pygeoprocessing.geoprocessing) geoprocessing.reproject_vector(2037) INFO starting reprojection 2023-03-22 07:38:24,779 (pygeoprocessing.geoprocessing) geoprocessing.reproject_vector(2077) INFO reprojection 100.0% complete on reprojected_farm_vector.shp 2023-03-22 07:38:24,822 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:24,822 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:24,822 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:24,979 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:24,980 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:25,062 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:25,062 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:25,062 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:25,185 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:25,185 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:25,392 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:25,392 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:25,393 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:25,465 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:25,466 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:25,547 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:25,548 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:25,548 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:25,614 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:25,614 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:25,711 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:25,712 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:25,713 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:25,841 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:25,842 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:25,938 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:25,939 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:25,939 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:26,018 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:26,018 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:26,098 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:26,098 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:26,099 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:26,214 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:26,215 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:26,359 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:26,360 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:26,361 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:26,481 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:26,481 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:26,614 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:26,615 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:26,615 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:26,656 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:26,656 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:26,729 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:26,730 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:26,730 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:26,772 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:26,772 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:26,837 (taskgraph.Task) Task.add_task(653) INFO A task was created that had an identical args signature sans target paths, but a different target_path_list of the same length. To avoid recomputation, dynamically adding previous Task (calculate_foraged_flowers_apis_spring (13)) as a dependent task to this one (calculate_foraged_flowers_apis2_spring (15)). 2023-03-22 07:38:26,841 (taskgraph.Task) Task.is_precalculated(1252) INFO not precalculated (calculate_foraged_flowers_apis2_spring (15)), Task hash exists, but there are these mismatches: Recorded path not in target path list c:\users\sibylle stöckli\desktop\invest\invest_output\intermediate_outputs\intermediate_outputs\foraged_flowers_index_apis_spring.tif 2023-03-22 07:38:26,850 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:26,851 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:26,851 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:26,890 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:26,890 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:26,942 (taskgraph.Task) Task.add_task(653) INFO A task was created that had an identical args signature sans target paths, but a different target_path_list of the same length. To avoid recomputation, dynamically adding previous Task (calculate_foraged_flowers_apis_summer (14)) as a dependent task to this one (calculate_foraged_flowers_apis2_summer (15)). 2023-03-22 07:38:26,952 (taskgraph.Task) Task.is_precalculated(1252) INFO not precalculated (calculate_foraged_flowers_apis2_summer (15)), Task hash exists, but there are these mismatches: Recorded path not in target path list c:\users\sibylle stöckli\desktop\invest\invest_output\intermediate_outputs\intermediate_outputs\foraged_flowers_index_apis_summer.tif 2023-03-22 07:38:26,962 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:26,963 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:26,963 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:26,996 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:26,996 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:27,064 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:27,065 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:27,065 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:27,100 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:27,100 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:27,164 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:27,165 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:27,165 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:27,201 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:27,201 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:27,254 (taskgraph.Task) Task.add_task(653) INFO A task was created that had an identical args signature sans target paths, but a different target_path_list of the same length. To avoid recomputation, dynamically adding previous Task (calculate_foraged_flowers_bombus_spring (15)) as a dependent task to this one (calculate_foraged_flowers_bombus2_spring (17)). 2023-03-22 07:38:27,260 (taskgraph.Task) Task.is_precalculated(1252) INFO not precalculated (calculate_foraged_flowers_bombus2_spring (17)), Task hash exists, but there are these mismatches: Recorded path not in target path list c:\users\sibylle stöckli\desktop\invest\invest_output\intermediate_outputs\intermediate_outputs\foraged_flowers_index_bombus_spring.tif 2023-03-22 07:38:27,270 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:27,271 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:27,271 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:27,310 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:27,310 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:27,365 (taskgraph.Task) Task.add_task(653) INFO A task was created that had an identical args signature sans target paths, but a different target_path_list of the same length. To avoid recomputation, dynamically adding previous Task (calculate_foraged_flowers_bombus_summer (16)) as a dependent task to this one (calculate_foraged_flowers_bombus2_summer (17)). 2023-03-22 07:38:27,373 (taskgraph.Task) Task.is_precalculated(1252) INFO not precalculated (calculate_foraged_flowers_bombus2_summer (17)), Task hash exists, but there are these mismatches: Recorded path not in target path list c:\users\sibylle stöckli\desktop\invest\invest_output\intermediate_outputs\intermediate_outputs\foraged_flowers_index_bombus_summer.tif 2023-03-22 07:38:27,381 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:27,382 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:27,383 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:27,417 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:27,417 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:27,494 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:27,494 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:27,494 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:27,565 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:27,567 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:27,697 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2983) INFO starting convolve 2023-03-22 07:38:27,698 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3001) DEBUG start fill work queue thread 2023-03-22 07:38:27,699 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3005) DEBUG fill work queue 2023-03-22 07:38:27,699 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3019) DEBUG start worker thread 2023-03-22 07:38:27,700 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3031) INFO 48 sent to workers, wait for worker results 2023-03-22 07:38:28,277 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3010) DEBUG work queue full 2023-03-22 07:38:28,395 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3095) INFO convolution worker 100.0% complete on floral_resources_apis.tif 2023-03-22 07:38:28,544 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3103) INFO need to normalize result so nodata values are not included 2023-03-22 07:38:28,792 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3139) INFO convolution nodata normalize 100.0% complete on floral_resources_apis.tif 2023-03-22 07:38:28,980 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:28,980 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:28,980 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:29,092 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:29,092 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:29,236 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2983) INFO starting convolve 2023-03-22 07:38:29,239 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3001) DEBUG start fill work queue thread 2023-03-22 07:38:29,239 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3005) DEBUG fill work queue 2023-03-22 07:38:29,240 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3019) DEBUG start worker thread 2023-03-22 07:38:29,240 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3031) INFO 48 sent to workers, wait for worker results 2023-03-22 07:38:29,856 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3010) DEBUG work queue full 2023-03-22 07:38:29,965 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3095) INFO convolution worker 100.0% complete on convolve_ps_apis.tif 2023-03-22 07:38:30,115 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3103) INFO need to normalize result so nodata values are not included 2023-03-22 07:38:30,339 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3139) INFO convolution nodata normalize 100.0% complete on convolve_ps_apis.tif 2023-03-22 07:38:30,594 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:30,594 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:30,594 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:30,763 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:30,763 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:30,957 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:30,957 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:30,958 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:31,114 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:31,114 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:31,227 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:31,228 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:31,228 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:31,293 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:31,294 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:31,427 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2983) INFO starting convolve 2023-03-22 07:38:31,428 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3001) DEBUG start fill work queue thread 2023-03-22 07:38:31,429 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3005) DEBUG fill work queue 2023-03-22 07:38:31,429 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3019) DEBUG start worker thread 2023-03-22 07:38:31,430 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3031) INFO 48 sent to workers, wait for worker results 2023-03-22 07:38:32,198 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3010) DEBUG work queue full 2023-03-22 07:38:32,362 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3095) INFO convolution worker 100.0% complete on floral_resources_apis2.tif 2023-03-22 07:38:32,490 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3103) INFO need to normalize result so nodata values are not included 2023-03-22 07:38:32,691 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3139) INFO convolution nodata normalize 100.0% complete on floral_resources_apis2.tif 2023-03-22 07:38:32,912 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:32,913 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:32,913 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:33,033 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:33,034 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:33,235 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2983) INFO starting convolve 2023-03-22 07:38:33,237 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3001) DEBUG start fill work queue thread 2023-03-22 07:38:33,238 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3005) DEBUG fill work queue 2023-03-22 07:38:33,238 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3019) DEBUG start worker thread 2023-03-22 07:38:33,238 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3031) INFO 48 sent to workers, wait for worker results 2023-03-22 07:38:34,218 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3010) DEBUG work queue full 2023-03-22 07:38:34,439 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3095) INFO convolution worker 100.0% complete on convolve_ps_apis2.tif 2023-03-22 07:38:34,632 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3103) INFO need to normalize result so nodata values are not included 2023-03-22 07:38:34,914 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3139) INFO convolution nodata normalize 100.0% complete on convolve_ps_apis2.tif 2023-03-22 07:38:35,201 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:35,201 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:35,202 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:35,420 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:35,420 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:35,631 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:35,632 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:35,632 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:35,846 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:35,846 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:36,014 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:36,016 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:36,016 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:36,109 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:36,109 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:36,300 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2983) INFO starting convolve 2023-03-22 07:38:36,303 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3001) DEBUG start fill work queue thread 2023-03-22 07:38:36,303 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3005) DEBUG fill work queue 2023-03-22 07:38:36,304 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3019) DEBUG start worker thread 2023-03-22 07:38:36,304 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3031) INFO 192 sent to workers, wait for worker results 2023-03-22 07:38:39,895 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3010) DEBUG work queue full 2023-03-22 07:38:40,006 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3095) INFO convolution worker 100.0% complete on floral_resources_bombus.tif 2023-03-22 07:38:40,133 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3103) INFO need to normalize result so nodata values are not included 2023-03-22 07:38:40,364 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3139) INFO convolution nodata normalize 100.0% complete on floral_resources_bombus.tif 2023-03-22 07:38:40,548 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:40,549 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:40,549 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:40,646 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:40,646 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:40,789 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2983) INFO starting convolve 2023-03-22 07:38:40,792 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3001) DEBUG start fill work queue thread 2023-03-22 07:38:40,793 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3005) DEBUG fill work queue 2023-03-22 07:38:40,793 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3019) DEBUG start worker thread 2023-03-22 07:38:40,794 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3031) INFO 192 sent to workers, wait for worker results 2023-03-22 07:38:44,056 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3010) DEBUG work queue full 2023-03-22 07:38:44,170 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3095) INFO convolution worker 100.0% complete on convolve_ps_bombus.tif 2023-03-22 07:38:44,293 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3103) INFO need to normalize result so nodata values are not included 2023-03-22 07:38:44,503 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3139) INFO convolution nodata normalize 100.0% complete on convolve_ps_bombus.tif 2023-03-22 07:38:44,688 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:44,688 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:44,688 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:44,842 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:44,842 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:44,989 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:44,990 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:44,990 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:45,150 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:45,151 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:45,300 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:45,300 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:45,300 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:45,363 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:45,364 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:45,413 (taskgraph.Task) Task.add_task(641) WARNING A duplicate task was submitted: Task object 2726029884480: {'exception_object': None, 'ignore_directories': True, 'ignore_path_list': [], 'priority': 0, 'self._reexecution_info': {'args_clean': [25.0, 'in_target_path_list'], 'func_name': 'exponential_decay_kernel_raster', 'kwargs_clean': {}, 'source_code_hash': 'da39a3ee5e6b4b0d3255bfef95601890afd80709'}, 'self._result': None, 'target_path_list': ['c:\\users\\sibylle ' 'stöckli\\desktop\\invest\\invest_output\\intermediate_outputs\\intermediate_outputs\\kernel_25.000000.tif'], 'task_id_hash': 'ca818777b3956cc87902e697ef6b2c4b44a9cf9b', 'task_name': 'decay_kernel_raster_25.0 (39)', 'task_reexecution_hash': None} original: Task object 2726029878816: {'exception_object': None, 'ignore_directories': True, 'ignore_path_list': [], 'priority': 0, 'self._reexecution_info': {'args_clean': [25.0, 'in_target_path_list'], 'file_stat_list': [], 'func_name': 'exponential_decay_kernel_raster', 'kwargs_clean': {}, 'other_arguments': [[25.0, 'c:\\users\\sibylle ' 'stöckli\\appdata\\local\\programs\\invest ' '3.12.1.post661+g3c399caae ' 'workbench\\in_target_path_list'], {}], 'source_code_hash': 'da39a3ee5e6b4b0d3255bfef95601890afd80709'}, 'self._result': None, 'target_path_list': ['c:\\users\\sibylle ' 'stöckli\\desktop\\invest\\invest_output\\intermediate_outputs\\intermediate_outputs\\kernel_25.000000.tif'], 'task_id_hash': 'ca818777b3956cc87902e697ef6b2c4b44a9cf9b', 'task_name': 'decay_kernel_raster_25.0 (25)', 'task_reexecution_hash': '39812d2dd1708df976dd9c94ee549d8fa656e18b'} 2023-03-22 07:38:45,462 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2983) INFO starting convolve 2023-03-22 07:38:45,464 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3001) DEBUG start fill work queue thread 2023-03-22 07:38:45,464 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3005) DEBUG fill work queue 2023-03-22 07:38:45,464 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3019) DEBUG start worker thread 2023-03-22 07:38:45,465 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3031) INFO 48 sent to workers, wait for worker results 2023-03-22 07:38:46,205 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3010) DEBUG work queue full 2023-03-22 07:38:46,359 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3095) INFO convolution worker 100.0% complete on floral_resources_bombus2.tif 2023-03-22 07:38:46,496 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3103) INFO need to normalize result so nodata values are not included 2023-03-22 07:38:46,695 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3139) INFO convolution nodata normalize 100.0% complete on floral_resources_bombus2.tif 2023-03-22 07:38:46,884 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:46,884 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:46,884 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:46,982 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:46,982 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:47,111 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(2983) INFO starting convolve 2023-03-22 07:38:47,113 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3001) DEBUG start fill work queue thread 2023-03-22 07:38:47,114 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3005) DEBUG fill work queue 2023-03-22 07:38:47,114 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3019) DEBUG start worker thread 2023-03-22 07:38:47,114 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3031) INFO 48 sent to workers, wait for worker results 2023-03-22 07:38:47,829 (pygeoprocessing.geoprocessing) geoprocessing._fill_work_queue(3010) DEBUG work queue full 2023-03-22 07:38:47,985 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3095) INFO convolution worker 100.0% complete on convolve_ps_bombus2.tif 2023-03-22 07:38:48,113 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3103) INFO need to normalize result so nodata values are not included 2023-03-22 07:38:48,306 (pygeoprocessing.geoprocessing) geoprocessing.convolve_2d(3139) INFO convolution nodata normalize 100.0% complete on convolve_ps_bombus2.tif 2023-03-22 07:38:48,528 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:48,529 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:48,529 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:48,704 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:48,704 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:48,825 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:48,825 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:48,826 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:48,978 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:48,978 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:49,116 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:49,116 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:49,116 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:49,262 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:49,263 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:49,378 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:49,379 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:49,379 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:49,549 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:49,549 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:49,810 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:49,811 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:49,811 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:49,868 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:49,869 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:50,034 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:50,035 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:50,035 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:50,090 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:50,090 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:50,157 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:50,158 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:50,158 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:50,206 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:50,206 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:50,339 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:50,339 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:50,339 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:50,382 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:50,382 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:50,439 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(470) INFO starting stats_worker 2023-03-22 07:38:50,440 (pygeoprocessing.geoprocessing_core) threading.run(953) DEBUG stats worker PID: 2528 2023-03-22 07:38:50,440 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(476) INFO started stats_worker 2023-03-22 07:38:50,478 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(555) INFO 100.0% complete 2023-03-22 07:38:50,478 (pygeoprocessing.geoprocessing) geoprocessing.raster_calculator(558) INFO Waiting for raster stats worker result. 2023-03-22 07:38:50,554 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(996) INFO 1 of 1 aligned: clipped_raster.tif 2023-03-22 07:38:50,554 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(1000) INFO aligned all 1 rasters. 2023-03-22 07:38:50,560 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1524) INFO build a lookup of aggregate field value to FID 2023-03-22 07:38:50,560 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1531) INFO creating disjoint polygon set 2023-03-22 07:38:50,561 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2554) INFO build shapely polygon list 2023-03-22 07:38:50,561 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2580) INFO build shapely rtree index 2023-03-22 07:38:50,562 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2593) INFO poly feature lookup 100.0% complete on farm_results.shp 2023-03-22 07:38:50,562 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2597) INFO build poly intersection lookup 2023-03-22 07:38:50,562 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2623) INFO poly intersection feature lookup 100.0% complete on farm_results.shp 2023-03-22 07:38:50,563 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2655) INFO maximal subset build 100.0% complete on farm_results.shp 2023-03-22 07:38:50,575 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1551) INFO processing 1 disjoint polygon sets 2023-03-22 07:38:50,576 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1581) INFO disjoint polygon set 1 of 1 100.0% processed on farm_results.shp 2023-03-22 07:38:50,577 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1589) INFO rasterizing disjoint polygon set 1 of 1 farm_results.shp 2023-03-22 07:38:50,584 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1607) INFO summarizing rasterized disjoint polygon set 1 of 1 farm_results.shp 2023-03-22 07:38:50,585 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1657) DEBUG unset_fids: 0 of 2 2023-03-22 07:38:50,586 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1662) DEBUG gt [ 4.7336312e+05 3.0000000e+01 0.0000000e+00 4.9282270e+06 0.0000000e+00 -3.0000000e+01] for ('C:\\Users\\Sibylle Stöckli\\Desktop\\InVEST\\InVEST_output\\intermediate_outputs\\wild_pollinator_yield.tif', 1) 2023-03-22 07:38:50,586 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1748) DEBUG remaining unset_fids: 0 of 2 2023-03-22 07:38:50,586 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1756) INFO all done processing polygon sets for farm_results.shp 2023-03-22 07:38:50,608 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(996) INFO 1 of 1 aligned: clipped_raster.tif 2023-03-22 07:38:50,608 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(1000) INFO aligned all 1 rasters. 2023-03-22 07:38:50,614 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1524) INFO build a lookup of aggregate field value to FID 2023-03-22 07:38:50,615 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1531) INFO creating disjoint polygon set 2023-03-22 07:38:50,615 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2554) INFO build shapely polygon list 2023-03-22 07:38:50,616 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2580) INFO build shapely rtree index 2023-03-22 07:38:50,616 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2593) INFO poly feature lookup 100.0% complete on farm_results.shp 2023-03-22 07:38:50,616 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2597) INFO build poly intersection lookup 2023-03-22 07:38:50,616 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2623) INFO poly intersection feature lookup 100.0% complete on farm_results.shp 2023-03-22 07:38:50,616 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2655) INFO maximal subset build 100.0% complete on farm_results.shp 2023-03-22 07:38:50,622 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1551) INFO processing 1 disjoint polygon sets 2023-03-22 07:38:50,622 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1581) INFO disjoint polygon set 1 of 1 100.0% processed on farm_results.shp 2023-03-22 07:38:50,622 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1589) INFO rasterizing disjoint polygon set 1 of 1 farm_results.shp 2023-03-22 07:38:50,628 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1607) INFO summarizing rasterized disjoint polygon set 1 of 1 farm_results.shp 2023-03-22 07:38:50,630 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1657) DEBUG unset_fids: 0 of 2 2023-03-22 07:38:50,630 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1662) DEBUG gt [ 4.7336312e+05 3.0000000e+01 0.0000000e+00 4.9282270e+06 0.0000000e+00 -3.0000000e+01] for ('C:\\Users\\Sibylle Stöckli\\Desktop\\InVEST\\InVEST_output\\intermediate_outputs\\total_pollinator_yield.tif', 1) 2023-03-22 07:38:50,631 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1748) DEBUG remaining unset_fids: 0 of 2 2023-03-22 07:38:50,631 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1756) INFO all done processing polygon sets for farm_results.shp 2023-03-22 07:38:50,659 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(996) INFO 1 of 1 aligned: clipped_raster.tif 2023-03-22 07:38:50,660 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(1000) INFO aligned all 1 rasters. 2023-03-22 07:38:50,686 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1524) INFO build a lookup of aggregate field value to FID 2023-03-22 07:38:50,686 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1531) INFO creating disjoint polygon set 2023-03-22 07:38:50,687 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2554) INFO build shapely polygon list 2023-03-22 07:38:50,688 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2580) INFO build shapely rtree index 2023-03-22 07:38:50,689 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2593) INFO poly feature lookup 100.0% complete on farm_results.shp 2023-03-22 07:38:50,689 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2597) INFO build poly intersection lookup 2023-03-22 07:38:50,689 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2623) INFO poly intersection feature lookup 100.0% complete on farm_results.shp 2023-03-22 07:38:50,689 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2655) INFO maximal subset build 100.0% complete on farm_results.shp 2023-03-22 07:38:50,699 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1551) INFO processing 1 disjoint polygon sets 2023-03-22 07:38:50,699 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1581) INFO disjoint polygon set 1 of 1 100.0% processed on farm_results.shp 2023-03-22 07:38:50,699 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1589) INFO rasterizing disjoint polygon set 1 of 1 farm_results.shp 2023-03-22 07:38:50,704 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1607) INFO summarizing rasterized disjoint polygon set 1 of 1 farm_results.shp 2023-03-22 07:38:50,706 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1657) DEBUG unset_fids: 0 of 2 2023-03-22 07:38:50,706 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1662) DEBUG gt [ 4.7336312e+05 3.0000000e+01 0.0000000e+00 4.9282270e+06 0.0000000e+00 -3.0000000e+01] for ('C:\\Users\\Sibylle Stöckli\\Desktop\\InVEST\\InVEST_output\\intermediate_outputs\\total_pollinator_abundance_spring.tif', 1) 2023-03-22 07:38:50,706 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1748) DEBUG remaining unset_fids: 0 of 2 2023-03-22 07:38:50,707 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1756) INFO all done processing polygon sets for farm_results.shp 2023-03-22 07:38:50,739 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(996) INFO 1 of 1 aligned: clipped_raster.tif 2023-03-22 07:38:50,739 (pygeoprocessing.geoprocessing) geoprocessing.align_and_resize_raster_stack(1000) INFO aligned all 1 rasters. 2023-03-22 07:38:50,754 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1524) INFO build a lookup of aggregate field value to FID 2023-03-22 07:38:50,754 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1531) INFO creating disjoint polygon set 2023-03-22 07:38:50,755 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2554) INFO build shapely polygon list 2023-03-22 07:38:50,755 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2580) INFO build shapely rtree index 2023-03-22 07:38:50,756 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2593) INFO poly feature lookup 100.0% complete on farm_results.shp 2023-03-22 07:38:50,756 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2597) INFO build poly intersection lookup 2023-03-22 07:38:50,757 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2623) INFO poly intersection feature lookup 100.0% complete on farm_results.shp 2023-03-22 07:38:50,757 (pygeoprocessing.geoprocessing) geoprocessing.calculate_disjoint_polygon_set(2655) INFO maximal subset build 100.0% complete on farm_results.shp 2023-03-22 07:38:50,764 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1551) INFO processing 1 disjoint polygon sets 2023-03-22 07:38:50,765 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1581) INFO disjoint polygon set 1 of 1 100.0% processed on farm_results.shp 2023-03-22 07:38:50,765 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1589) INFO rasterizing disjoint polygon set 1 of 1 farm_results.shp 2023-03-22 07:38:50,770 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1607) INFO summarizing rasterized disjoint polygon set 1 of 1 farm_results.shp 2023-03-22 07:38:50,772 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1657) DEBUG unset_fids: 0 of 2 2023-03-22 07:38:50,773 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1662) DEBUG gt [ 4.7336312e+05 3.0000000e+01 0.0000000e+00 4.9282270e+06 0.0000000e+00 -3.0000000e+01] for ('C:\\Users\\Sibylle Stöckli\\Desktop\\InVEST\\InVEST_output\\intermediate_outputs\\total_pollinator_abundance_summer.tif', 1) 2023-03-22 07:38:50,773 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1748) DEBUG remaining unset_fids: 0 of 2 2023-03-22 07:38:50,773 (pygeoprocessing.geoprocessing) geoprocessing.zonal_statistics(1756) INFO all done processing polygon sets for farm_results.shp 2023-03-22 07:38:50,777 (natcap.invest.utils) utils.prepare_workspace(181) INFO Elapsed time: 26.1s 2023-03-22 07:38:50,778 (natcap.invest.utils) utils.prepare_workspace(184) INFO Execution finished