2019-09-10 16:50:17,948 utils.prepare_workspace(115) INFO Writing log messages to D:\kbs_lter\habitat_quality\output\kbs\InVEST-Habitat-Quality-log-2019-09-10--16_50_17.txt
2019-09-10 16:50:17,950 model._logged_target(1653) Level 100 Starting model with parameters: 
Arguments for InVEST natcap.invest.habitat_quality 3.7.0.post367+h11eff01a4d13:
half_saturation_constant 0.6
lulc_cur_path            F:/DATA/LULC/CDL/2008_30m_cdls/2008_30m_cdls_250m_WGS84_Albers.tif
n_workers                -1
sensitivity_table_path   D:/kbs_lter/habitat_quality/input/sensitivity.csv
suffix                   0910
threat_raster_folder     F:\DATA\LULC\NLCD_USA\NLCD_Land_Cover_L48_2019424_full_results\TIF
threats_table_path       D:/kbs_lter/habitat_quality/input/threats.csv
workspace_dir            D:\kbs_lter\habitat_quality\output\kbs

2019-09-10 16:50:21,917 habitat_quality.execute(193) INFO Starting aligning and resizing land cover and threat rasters
2019-09-10 16:50:21,986 geoprocessing.align_and_resize_raster_stack(730) INFO n_workers > 1 (2) so starting a processes pool.
2019-09-10 16:50:41,006 geoprocessing.align_and_resize_raster_stack(780) INFO 1 of 5 aligned: 2008_30m_cdls_250m_WGS84_Albers_aligned.tif
2019-09-10 16:50:42,782 geoprocessing.align_and_resize_raster_stack(780) INFO 2 of 5 aligned: srds_c_aligned.tif
2019-09-10 16:50:52,151 geoprocessing.align_and_resize_raster_stack(780) INFO 3 of 5 aligned: prds_c_aligned.tif
2019-09-10 16:50:53,088 geoprocessing.align_and_resize_raster_stack(780) INFO 4 of 5 aligned: crp_c_aligned.tif
2019-09-10 16:51:00,078 geoprocessing.align_and_resize_raster_stack(780) INFO 5 of 5 aligned: urb_c_aligned.tif
2019-09-10 16:51:00,200 geoprocessing.align_and_resize_raster_stack(789) INFO aligned all 5 rasters.
2019-09-10 16:51:00,201 habitat_quality.execute(207) INFO Finished aligning and resizing land cover and threat rasters
2019-09-10 16:51:00,203 habitat_quality.execute(221) INFO Starting habitat_quality biophysical calculations
2019-09-10 16:51:00,203 habitat_quality.execute(228) INFO Handling Access Shape
2019-09-10 16:51:05,456 habitat_quality.execute(241) INFO No Access Shape Provided, access raster filled with 1s.
2019-09-10 16:51:05,457 habitat_quality.execute(249) DEBUG lulc_path_dict : {'_c': u'D:\\kbs_lter\\habitat_quality\\output\\kbs\\intermediate\\2008_30m_cdls_250m_WGS84_Albers_aligned.tif'}
2019-09-10 16:51:05,457 habitat_quality.execute(253) INFO Calculating habitat quality for landuse: D:\kbs_lter\habitat_quality\output\kbs\intermediate\2008_30m_cdls_250m_WGS84_Albers_aligned.tif
2019-09-10 16:51:05,457 habitat_quality.map_raster_to_dict_values(641) INFO Starting map_raster_to_dict_values
2019-09-10 16:51:05,460 geoprocessing.raster_calculator(367) INFO starting stats_worker
2019-09-10 16:51:05,461 geoprocessing.raster_calculator(373) INFO started stats_worker <Thread(Thread-5, started daemon 27760)>
2019-09-10 16:51:10,463 geoprocessing.<lambda>(443) INFO 52.2% complete
2019-09-10 16:51:15,290 geoprocessing.raster_calculator(446) INFO 100.0%% complete
2019-09-10 16:51:15,292 geoprocessing.raster_calculator(449) INFO signaling stats worker to terminate
2019-09-10 16:51:15,292 geoprocessing.raster_calculator(451) INFO Waiting for raster stats worker result.
2019-09-10 16:51:15,292 threading.run(754) DEBUG payload is None, terminating
2019-09-10 16:51:15,747 habitat_quality.execute(276) INFO Calculating threat: srds.
Threat data: {'MAX_DIST': 1L, 'THREAT': 'srds', 'WEIGHT': 0.7, 'DECAY': 'linear'}
2019-09-10 16:51:15,747 habitat_quality.execute(280) INFO threat_raster_path D:\kbs_lter\habitat_quality\output\kbs\intermediate\srds_c_aligned.tif
2019-09-10 16:51:15,750 habitat_quality.execute(303) DEBUG Max distance in pixels: 4.000000
2019-09-10 16:51:20,759 geoprocessing.<lambda>(919) INFO 55.5% complete
2019-09-10 16:51:30,819 geoprocessing.<lambda>(919) INFO 99.3% complete
2019-09-10 16:51:31,431 geoprocessing.convolve_2d(2423) INFO starting convolve
2019-09-10 16:51:36,453 geoprocessing.<lambda>(2527) INFO convolution worker approximately 4.1% complete on filtered_srds_c_0910.tif
2019-09-10 16:51:41,513 geoprocessing.<lambda>(2527) INFO convolution worker approximately 7.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:51:46,559 geoprocessing.<lambda>(2527) INFO convolution worker approximately 10.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:51:51,654 geoprocessing.<lambda>(2527) INFO convolution worker approximately 12.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:51:56,753 geoprocessing.<lambda>(2527) INFO convolution worker approximately 14.8% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:01,861 geoprocessing.<lambda>(2527) INFO convolution worker approximately 16.8% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:06,976 geoprocessing.<lambda>(2527) INFO convolution worker approximately 18.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:12,019 geoprocessing.<lambda>(2527) INFO convolution worker approximately 20.4% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:17,055 geoprocessing.<lambda>(2527) INFO convolution worker approximately 21.8% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:22,148 geoprocessing.<lambda>(2527) INFO convolution worker approximately 23.6% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:27,214 geoprocessing.<lambda>(2527) INFO convolution worker approximately 25.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:32,280 geoprocessing.<lambda>(2527) INFO convolution worker approximately 27.0% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:37,303 geoprocessing.<lambda>(2527) INFO convolution worker approximately 28.4% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:42,309 geoprocessing.<lambda>(2527) INFO convolution worker approximately 30.0% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:47,381 geoprocessing.<lambda>(2527) INFO convolution worker approximately 31.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:52,384 geoprocessing.<lambda>(2527) INFO convolution worker approximately 33.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:52:57,387 geoprocessing.<lambda>(2527) INFO convolution worker approximately 34.8% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:02,456 geoprocessing.<lambda>(2527) INFO convolution worker approximately 36.4% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:07,540 geoprocessing.<lambda>(2527) INFO convolution worker approximately 38.1% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:12,585 geoprocessing.<lambda>(2527) INFO convolution worker approximately 39.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:17,753 geoprocessing.<lambda>(2527) INFO convolution worker approximately 41.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:22,821 geoprocessing.<lambda>(2527) INFO convolution worker approximately 43.1% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:27,907 geoprocessing.<lambda>(2527) INFO convolution worker approximately 44.9% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:32,943 geoprocessing.<lambda>(2527) INFO convolution worker approximately 46.6% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:37,993 geoprocessing.<lambda>(2527) INFO convolution worker approximately 48.0% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:43,061 geoprocessing.<lambda>(2527) INFO convolution worker approximately 49.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:48,165 geoprocessing.<lambda>(2527) INFO convolution worker approximately 51.4% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:53,239 geoprocessing.<lambda>(2527) INFO convolution worker approximately 53.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:53:58,289 geoprocessing.<lambda>(2527) INFO convolution worker approximately 54.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:03,302 geoprocessing.<lambda>(2527) INFO convolution worker approximately 56.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:08,359 geoprocessing.<lambda>(2527) INFO convolution worker approximately 58.1% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:13,480 geoprocessing.<lambda>(2527) INFO convolution worker approximately 60.0% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:18,509 geoprocessing.<lambda>(2527) INFO convolution worker approximately 61.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:23,546 geoprocessing.<lambda>(2527) INFO convolution worker approximately 63.4% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:28,611 geoprocessing.<lambda>(2527) INFO convolution worker approximately 65.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:33,641 geoprocessing.<lambda>(2527) INFO convolution worker approximately 67.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:38,667 geoprocessing.<lambda>(2527) INFO convolution worker approximately 69.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:43,680 geoprocessing.<lambda>(2527) INFO convolution worker approximately 71.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:48,766 geoprocessing.<lambda>(2527) INFO convolution worker approximately 73.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:53,815 geoprocessing.<lambda>(2527) INFO convolution worker approximately 75.6% complete on filtered_srds_c_0910.tif
2019-09-10 16:54:58,851 geoprocessing.<lambda>(2527) INFO convolution worker approximately 77.9% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:03,940 geoprocessing.<lambda>(2527) INFO convolution worker approximately 80.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:08,989 geoprocessing.<lambda>(2527) INFO convolution worker approximately 82.5% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:14,013 geoprocessing.<lambda>(2527) INFO convolution worker approximately 85.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:19,032 geoprocessing.<lambda>(2527) INFO convolution worker approximately 88.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:24,052 geoprocessing.<lambda>(2527) INFO convolution worker approximately 92.0% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:29,068 geoprocessing.<lambda>(2527) INFO convolution worker approximately 95.9% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:32,421 geoprocessing.convolve_2d(2532) INFO convolution worker 100.0% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:32,716 geoprocessing.convolve_2d(2537) INFO need to normalize result so nodata values are not included
2019-09-10 16:55:34,071 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 7.9% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:39,108 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 16.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:44,112 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 21.1% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:49,118 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 25.7% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:54,125 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 30.0% complete on filtered_srds_c_0910.tif
2019-09-10 16:55:59,161 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 34.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:04,165 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 38.5% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:09,196 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 42.9% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:14,217 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 47.5% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:19,250 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 51.9% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:24,265 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 56.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:29,288 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 60.9% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:34,289 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 66.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:39,302 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 71.3% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:44,305 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 77.2% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:49,326 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 84.6% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:54,349 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 96.6% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:55,381 geoprocessing.convolve_2d(2576) INFO convolution nodata normalize 100.0% complete on filtered_srds_c_0910.tif
2019-09-10 16:56:55,792 habitat_quality.map_raster_to_dict_values(641) INFO Starting map_raster_to_dict_values
2019-09-10 16:56:55,812 geoprocessing.raster_calculator(367) INFO starting stats_worker
2019-09-10 16:56:55,812 geoprocessing.raster_calculator(373) INFO started stats_worker <Thread(Thread-7, started daemon 25984)>
2019-09-10 16:57:00,816 geoprocessing.<lambda>(443) INFO 32.8% complete
2019-09-10 16:57:05,822 geoprocessing.<lambda>(443) INFO 54.2% complete
2019-09-10 16:57:10,829 geoprocessing.<lambda>(443) INFO 75.8% complete
2019-09-10 16:57:15,082 geoprocessing.raster_calculator(446) INFO 100.0%% complete
2019-09-10 16:57:15,084 geoprocessing.raster_calculator(449) INFO signaling stats worker to terminate
2019-09-10 16:57:15,084 geoprocessing.raster_calculator(451) INFO Waiting for raster stats worker result.
2019-09-10 16:57:15,084 threading.run(754) DEBUG payload is None, terminating
2019-09-10 16:57:15,568 habitat_quality.execute(276) INFO Calculating threat: prds.
Threat data: {'MAX_DIST': 3L, 'THREAT': 'prds', 'WEIGHT': 1.0, 'DECAY': 'linear'}
2019-09-10 16:57:15,569 habitat_quality.execute(280) INFO threat_raster_path D:\kbs_lter\habitat_quality\output\kbs\intermediate\prds_c_aligned.tif
2019-09-10 16:57:15,569 habitat_quality.execute(303) DEBUG Max distance in pixels: 12.000000
2019-09-10 16:57:20,578 geoprocessing.<lambda>(919) INFO 56.0% complete
2019-09-10 16:57:30,756 geoprocessing.<lambda>(919) INFO 95.0% complete
2019-09-10 16:57:31,701 geoprocessing.convolve_2d(2423) INFO starting convolve
2019-09-10 16:57:36,719 geoprocessing.<lambda>(2527) INFO convolution worker approximately 4.1% complete on filtered_prds_c_0910.tif
2019-09-10 16:57:41,773 geoprocessing.<lambda>(2527) INFO convolution worker approximately 8.0% complete on filtered_prds_c_0910.tif
2019-09-10 16:57:46,790 geoprocessing.<lambda>(2527) INFO convolution worker approximately 11.4% complete on filtered_prds_c_0910.tif
2019-09-10 16:57:51,835 geoprocessing.<lambda>(2527) INFO convolution worker approximately 14.4% complete on filtered_prds_c_0910.tif
2019-09-10 16:57:56,848 geoprocessing.<lambda>(2527) INFO convolution worker approximately 17.3% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:01,907 geoprocessing.<lambda>(2527) INFO convolution worker approximately 20.0% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:06,921 geoprocessing.<lambda>(2527) INFO convolution worker approximately 22.6% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:12,025 geoprocessing.<lambda>(2527) INFO convolution worker approximately 25.3% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:17,088 geoprocessing.<lambda>(2527) INFO convolution worker approximately 27.9% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:22,154 geoprocessing.<lambda>(2527) INFO convolution worker approximately 30.0% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:27,243 geoprocessing.<lambda>(2527) INFO convolution worker approximately 32.0% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:32,266 geoprocessing.<lambda>(2527) INFO convolution worker approximately 34.0% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:37,311 geoprocessing.<lambda>(2527) INFO convolution worker approximately 36.1% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:42,355 geoprocessing.<lambda>(2527) INFO convolution worker approximately 37.8% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:47,421 geoprocessing.<lambda>(2527) INFO convolution worker approximately 39.6% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:52,474 geoprocessing.<lambda>(2527) INFO convolution worker approximately 41.6% complete on filtered_prds_c_0910.tif
2019-09-10 16:58:57,513 geoprocessing.<lambda>(2527) INFO convolution worker approximately 43.7% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:02,536 geoprocessing.<lambda>(2527) INFO convolution worker approximately 45.6% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:07,561 geoprocessing.<lambda>(2527) INFO convolution worker approximately 47.6% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:12,674 geoprocessing.<lambda>(2527) INFO convolution worker approximately 49.6% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:17,688 geoprocessing.<lambda>(2527) INFO convolution worker approximately 51.5% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:22,713 geoprocessing.<lambda>(2527) INFO convolution worker approximately 53.6% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:27,737 geoprocessing.<lambda>(2527) INFO convolution worker approximately 55.9% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:32,779 geoprocessing.<lambda>(2527) INFO convolution worker approximately 58.1% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:37,858 geoprocessing.<lambda>(2527) INFO convolution worker approximately 60.2% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:42,911 geoprocessing.<lambda>(2527) INFO convolution worker approximately 62.2% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:48,030 geoprocessing.<lambda>(2527) INFO convolution worker approximately 63.8% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:53,127 geoprocessing.<lambda>(2527) INFO convolution worker approximately 65.8% complete on filtered_prds_c_0910.tif
2019-09-10 16:59:58,134 geoprocessing.<lambda>(2527) INFO convolution worker approximately 68.0% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:03,138 geoprocessing.<lambda>(2527) INFO convolution worker approximately 70.7% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:08,141 geoprocessing.<lambda>(2527) INFO convolution worker approximately 73.3% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:13,204 geoprocessing.<lambda>(2527) INFO convolution worker approximately 75.7% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:18,219 geoprocessing.<lambda>(2527) INFO convolution worker approximately 78.1% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:23,246 geoprocessing.<lambda>(2527) INFO convolution worker approximately 80.6% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:28,298 geoprocessing.<lambda>(2527) INFO convolution worker approximately 83.0% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:33,316 geoprocessing.<lambda>(2527) INFO convolution worker approximately 86.0% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:38,319 geoprocessing.<lambda>(2527) INFO convolution worker approximately 89.4% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:43,339 geoprocessing.<lambda>(2527) INFO convolution worker approximately 93.0% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:48,367 geoprocessing.<lambda>(2527) INFO convolution worker approximately 96.8% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:50,618 geoprocessing.convolve_2d(2532) INFO convolution worker 100.0% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:50,917 geoprocessing.convolve_2d(2537) INFO need to normalize result so nodata values are not included
2019-09-10 17:00:53,371 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 13.8% complete on filtered_prds_c_0910.tif
2019-09-10 17:00:58,372 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 29.2% complete on filtered_prds_c_0910.tif
2019-09-10 17:01:03,387 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 39.7% complete on filtered_prds_c_0910.tif
2019-09-10 17:01:08,394 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 49.5% complete on filtered_prds_c_0910.tif
2019-09-10 17:01:13,404 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 60.6% complete on filtered_prds_c_0910.tif
2019-09-10 17:01:18,417 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 70.9% complete on filtered_prds_c_0910.tif
2019-09-10 17:01:23,424 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 84.7% complete on filtered_prds_c_0910.tif
2019-09-10 17:01:27,076 geoprocessing.convolve_2d(2576) INFO convolution nodata normalize 100.0% complete on filtered_prds_c_0910.tif
2019-09-10 17:01:27,438 habitat_quality.map_raster_to_dict_values(641) INFO Starting map_raster_to_dict_values
2019-09-10 17:01:27,549 geoprocessing.raster_calculator(367) INFO starting stats_worker
2019-09-10 17:01:27,551 geoprocessing.raster_calculator(373) INFO started stats_worker <Thread(Thread-9, started daemon 6512)>
2019-09-10 17:01:32,552 geoprocessing.<lambda>(443) INFO 33.2% complete
2019-09-10 17:01:37,555 geoprocessing.<lambda>(443) INFO 54.9% complete
2019-09-10 17:01:42,559 geoprocessing.<lambda>(443) INFO 76.8% complete
2019-09-10 17:01:46,592 geoprocessing.raster_calculator(446) INFO 100.0%% complete
2019-09-10 17:01:46,594 geoprocessing.raster_calculator(449) INFO signaling stats worker to terminate
2019-09-10 17:01:46,594 geoprocessing.raster_calculator(451) INFO Waiting for raster stats worker result.
2019-09-10 17:01:46,594 threading.run(754) DEBUG payload is None, terminating
2019-09-10 17:01:47,095 habitat_quality.execute(276) INFO Calculating threat: crp.
Threat data: {'MAX_DIST': 8L, 'THREAT': 'crp', 'WEIGHT': 0.7, 'DECAY': 'linear'}
2019-09-10 17:01:47,095 habitat_quality.execute(280) INFO threat_raster_path D:\kbs_lter\habitat_quality\output\kbs\intermediate\crp_c_aligned.tif
2019-09-10 17:01:47,096 habitat_quality.execute(303) DEBUG Max distance in pixels: 32.000000
2019-09-10 17:01:52,108 geoprocessing.<lambda>(919) INFO 54.5% complete
2019-09-10 17:02:02,364 geoprocessing.<lambda>(919) INFO 88.9% complete
2019-09-10 17:02:03,673 geoprocessing.convolve_2d(2423) INFO starting convolve
2019-09-10 17:02:08,697 geoprocessing.<lambda>(2527) INFO convolution worker approximately 3.8% complete on filtered_crp_c_0910.tif
2019-09-10 17:02:13,700 geoprocessing.<lambda>(2527) INFO convolution worker approximately 6.9% complete on filtered_crp_c_0910.tif
2019-09-10 17:02:18,707 geoprocessing.<lambda>(2527) INFO convolution worker approximately 9.7% complete on filtered_crp_c_0910.tif
2019-09-10 17:02:23,733 geoprocessing.<lambda>(2527) INFO convolution worker approximately 11.9% complete on filtered_crp_c_0910.tif
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2019-09-10 17:05:30,470 geoprocessing.<lambda>(2527) INFO convolution worker approximately 72.3% complete on filtered_crp_c_0910.tif
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2019-09-10 17:06:10,785 geoprocessing.<lambda>(2527) INFO convolution worker approximately 90.2% complete on filtered_crp_c_0910.tif
2019-09-10 17:06:15,793 geoprocessing.<lambda>(2527) INFO convolution worker approximately 93.4% complete on filtered_crp_c_0910.tif
2019-09-10 17:06:20,832 geoprocessing.<lambda>(2527) INFO convolution worker approximately 96.6% complete on filtered_crp_c_0910.tif
2019-09-10 17:06:23,808 geoprocessing.convolve_2d(2532) INFO convolution worker 100.0% complete on filtered_crp_c_0910.tif
2019-09-10 17:06:24,260 geoprocessing.convolve_2d(2537) INFO need to normalize result so nodata values are not included
2019-09-10 17:06:25,835 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 8.1% complete on filtered_crp_c_0910.tif
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2019-09-10 17:07:40,721 geoprocessing.convolve_2d(2576) INFO convolution nodata normalize 100.0% complete on filtered_crp_c_0910.tif
2019-09-10 17:07:41,161 habitat_quality.map_raster_to_dict_values(641) INFO Starting map_raster_to_dict_values
2019-09-10 17:07:41,165 geoprocessing.raster_calculator(367) INFO starting stats_worker
2019-09-10 17:07:41,167 geoprocessing.raster_calculator(373) INFO started stats_worker <Thread(Thread-11, started daemon 28540)>
2019-09-10 17:07:46,167 geoprocessing.<lambda>(443) INFO 33.2% complete
2019-09-10 17:07:51,170 geoprocessing.<lambda>(443) INFO 55.0% complete
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2019-09-10 17:08:00,002 geoprocessing.raster_calculator(446) INFO 100.0%% complete
2019-09-10 17:08:00,003 geoprocessing.raster_calculator(449) INFO signaling stats worker to terminate
2019-09-10 17:08:00,003 geoprocessing.raster_calculator(451) INFO Waiting for raster stats worker result.
2019-09-10 17:08:00,003 threading.run(754) DEBUG payload is None, terminating
2019-09-10 17:08:00,484 habitat_quality.execute(276) INFO Calculating threat: urb.
Threat data: {'MAX_DIST': 10L, 'THREAT': 'urb', 'WEIGHT': 1.0, 'DECAY': 'exponential'}
2019-09-10 17:08:00,484 habitat_quality.execute(280) INFO threat_raster_path D:\kbs_lter\habitat_quality\output\kbs\intermediate\urb_c_aligned.tif
2019-09-10 17:08:00,486 habitat_quality.execute(303) DEBUG Max distance in pixels: 40.000000
2019-09-10 17:08:05,516 geoprocessing.<lambda>(919) INFO 56.2% complete
2019-09-10 17:08:15,473 geoprocessing.<lambda>(919) INFO 99.3% complete
2019-09-10 17:08:16,088 geoprocessing.convolve_2d(2423) INFO starting convolve
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2019-09-10 17:15:24,688 geoprocessing.<lambda>(2527) INFO convolution worker approximately 45.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:15:29,737 geoprocessing.<lambda>(2527) INFO convolution worker approximately 46.1% complete on filtered_urb_c_0910.tif
2019-09-10 17:15:34,760 geoprocessing.<lambda>(2527) INFO convolution worker approximately 46.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:15:39,825 geoprocessing.<lambda>(2527) INFO convolution worker approximately 47.1% complete on filtered_urb_c_0910.tif
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2019-09-10 17:15:49,884 geoprocessing.<lambda>(2527) INFO convolution worker approximately 48.1% complete on filtered_urb_c_0910.tif
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2019-09-10 17:16:05,039 geoprocessing.<lambda>(2527) INFO convolution worker approximately 49.6% complete on filtered_urb_c_0910.tif
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2019-09-10 17:16:30,266 geoprocessing.<lambda>(2527) INFO convolution worker approximately 52.2% complete on filtered_urb_c_0910.tif
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2019-09-10 17:16:40,388 geoprocessing.<lambda>(2527) INFO convolution worker approximately 53.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:16:45,413 geoprocessing.<lambda>(2527) INFO convolution worker approximately 53.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:16:50,542 geoprocessing.<lambda>(2527) INFO convolution worker approximately 54.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:16:55,562 geoprocessing.<lambda>(2527) INFO convolution worker approximately 54.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:00,648 geoprocessing.<lambda>(2527) INFO convolution worker approximately 55.3% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:05,746 geoprocessing.<lambda>(2527) INFO convolution worker approximately 55.8% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:10,795 geoprocessing.<lambda>(2527) INFO convolution worker approximately 56.3% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:15,907 geoprocessing.<lambda>(2527) INFO convolution worker approximately 56.8% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:20,987 geoprocessing.<lambda>(2527) INFO convolution worker approximately 57.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:26,036 geoprocessing.<lambda>(2527) INFO convolution worker approximately 57.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:31,098 geoprocessing.<lambda>(2527) INFO convolution worker approximately 58.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:36,151 geoprocessing.<lambda>(2527) INFO convolution worker approximately 58.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:41,174 geoprocessing.<lambda>(2527) INFO convolution worker approximately 59.5% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:46,180 geoprocessing.<lambda>(2527) INFO convolution worker approximately 60.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:51,200 geoprocessing.<lambda>(2527) INFO convolution worker approximately 60.5% complete on filtered_urb_c_0910.tif
2019-09-10 17:17:56,319 geoprocessing.<lambda>(2527) INFO convolution worker approximately 61.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:01,358 geoprocessing.<lambda>(2527) INFO convolution worker approximately 61.5% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:06,378 geoprocessing.<lambda>(2527) INFO convolution worker approximately 62.1% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:11,417 geoprocessing.<lambda>(2527) INFO convolution worker approximately 62.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:16,476 geoprocessing.<lambda>(2527) INFO convolution worker approximately 63.1% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:21,506 geoprocessing.<lambda>(2527) INFO convolution worker approximately 63.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:26,601 geoprocessing.<lambda>(2527) INFO convolution worker approximately 64.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:31,704 geoprocessing.<lambda>(2527) INFO convolution worker approximately 64.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:36,835 geoprocessing.<lambda>(2527) INFO convolution worker approximately 65.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:41,865 geoprocessing.<lambda>(2527) INFO convolution worker approximately 65.8% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:46,897 geoprocessing.<lambda>(2527) INFO convolution worker approximately 66.3% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:51,901 geoprocessing.<lambda>(2527) INFO convolution worker approximately 66.8% complete on filtered_urb_c_0910.tif
2019-09-10 17:18:56,957 geoprocessing.<lambda>(2527) INFO convolution worker approximately 67.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:01,963 geoprocessing.<lambda>(2527) INFO convolution worker approximately 67.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:06,977 geoprocessing.<lambda>(2527) INFO convolution worker approximately 68.5% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:12,003 geoprocessing.<lambda>(2527) INFO convolution worker approximately 69.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:17,138 geoprocessing.<lambda>(2527) INFO convolution worker approximately 69.5% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:22,148 geoprocessing.<lambda>(2527) INFO convolution worker approximately 70.1% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:27,164 geoprocessing.<lambda>(2527) INFO convolution worker approximately 70.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:32,259 geoprocessing.<lambda>(2527) INFO convolution worker approximately 71.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:37,267 geoprocessing.<lambda>(2527) INFO convolution worker approximately 71.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:42,308 geoprocessing.<lambda>(2527) INFO convolution worker approximately 72.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:47,348 geoprocessing.<lambda>(2527) INFO convolution worker approximately 72.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:52,351 geoprocessing.<lambda>(2527) INFO convolution worker approximately 73.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:19:57,365 geoprocessing.<lambda>(2527) INFO convolution worker approximately 73.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:02,368 geoprocessing.<lambda>(2527) INFO convolution worker approximately 74.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:07,447 geoprocessing.<lambda>(2527) INFO convolution worker approximately 75.1% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:12,536 geoprocessing.<lambda>(2527) INFO convolution worker approximately 75.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:17,571 geoprocessing.<lambda>(2527) INFO convolution worker approximately 76.1% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:22,601 geoprocessing.<lambda>(2527) INFO convolution worker approximately 76.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:27,605 geoprocessing.<lambda>(2527) INFO convolution worker approximately 77.3% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:32,624 geoprocessing.<lambda>(2527) INFO convolution worker approximately 77.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:37,635 geoprocessing.<lambda>(2527) INFO convolution worker approximately 78.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:42,674 geoprocessing.<lambda>(2527) INFO convolution worker approximately 79.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:47,710 geoprocessing.<lambda>(2527) INFO convolution worker approximately 79.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:52,747 geoprocessing.<lambda>(2527) INFO convolution worker approximately 80.1% complete on filtered_urb_c_0910.tif
2019-09-10 17:20:57,855 geoprocessing.<lambda>(2527) INFO convolution worker approximately 80.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:02,855 geoprocessing.<lambda>(2527) INFO convolution worker approximately 81.3% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:07,936 geoprocessing.<lambda>(2527) INFO convolution worker approximately 81.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:12,943 geoprocessing.<lambda>(2527) INFO convolution worker approximately 82.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:17,977 geoprocessing.<lambda>(2527) INFO convolution worker approximately 82.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:22,996 geoprocessing.<lambda>(2527) INFO convolution worker approximately 83.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:28,035 geoprocessing.<lambda>(2527) INFO convolution worker approximately 84.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:33,089 geoprocessing.<lambda>(2527) INFO convolution worker approximately 84.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:38,095 geoprocessing.<lambda>(2527) INFO convolution worker approximately 85.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:43,128 geoprocessing.<lambda>(2527) INFO convolution worker approximately 85.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:48,157 geoprocessing.<lambda>(2527) INFO convolution worker approximately 86.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:53,200 geoprocessing.<lambda>(2527) INFO convolution worker approximately 87.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:21:58,229 geoprocessing.<lambda>(2527) INFO convolution worker approximately 87.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:03,262 geoprocessing.<lambda>(2527) INFO convolution worker approximately 88.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:08,293 geoprocessing.<lambda>(2527) INFO convolution worker approximately 88.8% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:13,309 geoprocessing.<lambda>(2527) INFO convolution worker approximately 89.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:18,391 geoprocessing.<lambda>(2527) INFO convolution worker approximately 90.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:23,421 geoprocessing.<lambda>(2527) INFO convolution worker approximately 90.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:28,431 geoprocessing.<lambda>(2527) INFO convolution worker approximately 91.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:33,446 geoprocessing.<lambda>(2527) INFO convolution worker approximately 91.8% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:38,457 geoprocessing.<lambda>(2527) INFO convolution worker approximately 92.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:43,487 geoprocessing.<lambda>(2527) INFO convolution worker approximately 93.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:48,598 geoprocessing.<lambda>(2527) INFO convolution worker approximately 93.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:53,635 geoprocessing.<lambda>(2527) INFO convolution worker approximately 94.3% complete on filtered_urb_c_0910.tif
2019-09-10 17:22:58,673 geoprocessing.<lambda>(2527) INFO convolution worker approximately 94.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:03,700 geoprocessing.<lambda>(2527) INFO convolution worker approximately 95.5% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:08,798 geoprocessing.<lambda>(2527) INFO convolution worker approximately 96.1% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:13,825 geoprocessing.<lambda>(2527) INFO convolution worker approximately 96.8% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:18,836 geoprocessing.<lambda>(2527) INFO convolution worker approximately 97.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:23,855 geoprocessing.<lambda>(2527) INFO convolution worker approximately 98.8% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:26,055 geoprocessing.convolve_2d(2532) INFO convolution worker 100.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:27,092 geoprocessing.convolve_2d(2537) INFO need to normalize result so nodata values are not included
2019-09-10 17:23:28,875 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 6.7% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:33,878 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 16.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:38,898 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 23.9% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:43,907 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 30.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:48,923 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 36.6% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:53,927 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 43.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:23:58,937 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 49.4% complete on filtered_urb_c_0910.tif
2019-09-10 17:24:03,940 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 56.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:24:08,963 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 62.5% complete on filtered_urb_c_0910.tif
2019-09-10 17:24:13,970 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 69.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:24:18,984 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 76.5% complete on filtered_urb_c_0910.tif
2019-09-10 17:24:24,005 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 85.2% complete on filtered_urb_c_0910.tif
2019-09-10 17:24:29,009 geoprocessing.<lambda>(2569) INFO convolution nodata normalizer approximately 98.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:24:29,835 geoprocessing.convolve_2d(2576) INFO convolution nodata normalize 100.0% complete on filtered_urb_c_0910.tif
2019-09-10 17:24:30,408 habitat_quality.map_raster_to_dict_values(641) INFO Starting map_raster_to_dict_values
2019-09-10 17:24:30,413 geoprocessing.raster_calculator(367) INFO starting stats_worker
2019-09-10 17:24:30,414 geoprocessing.raster_calculator(373) INFO started stats_worker <Thread(Thread-13, started daemon 2520)>
2019-09-10 17:24:35,423 geoprocessing.<lambda>(443) INFO 33.4% complete
2019-09-10 17:24:40,431 geoprocessing.<lambda>(443) INFO 54.9% complete
2019-09-10 17:24:45,436 geoprocessing.<lambda>(443) INFO 76.5% complete
2019-09-10 17:24:49,482 geoprocessing.raster_calculator(446) INFO 100.0%% complete
2019-09-10 17:24:49,482 geoprocessing.raster_calculator(449) INFO signaling stats worker to terminate
2019-09-10 17:24:49,482 geoprocessing.raster_calculator(451) INFO Waiting for raster stats worker result.
2019-09-10 17:24:49,482 threading.run(754) DEBUG payload is None, terminating
2019-09-10 17:24:50,022 habitat_quality.execute(395) INFO Starting raster calculation on total_degradation
2019-09-10 17:24:50,433 geoprocessing.raster_calculator(367) INFO starting stats_worker
2019-09-10 17:24:50,433 geoprocessing.raster_calculator(373) INFO started stats_worker <Thread(Thread-14, started daemon 9520)>
2019-09-10 17:24:55,437 geoprocessing.<lambda>(443) INFO 12.2% complete
2019-09-10 17:25:00,453 geoprocessing.<lambda>(443) INFO 20.0% complete
2019-09-10 17:25:05,470 geoprocessing.<lambda>(443) INFO 27.2% complete
2019-09-10 17:25:10,479 geoprocessing.<lambda>(443) INFO 33.7% complete
2019-09-10 17:25:15,496 geoprocessing.<lambda>(443) INFO 40.1% complete
2019-09-10 17:25:20,513 geoprocessing.<lambda>(443) INFO 46.5% complete
2019-09-10 17:25:25,532 geoprocessing.<lambda>(443) INFO 53.0% complete
2019-09-10 17:25:30,543 geoprocessing.<lambda>(443) INFO 59.6% complete
2019-09-10 17:25:35,565 geoprocessing.<lambda>(443) INFO 66.8% complete
2019-09-10 17:25:40,578 geoprocessing.<lambda>(443) INFO 74.7% complete
2019-09-10 17:25:45,594 geoprocessing.<lambda>(443) INFO 83.8% complete
2019-09-10 17:25:50,595 geoprocessing.<lambda>(443) INFO 96.8% complete
2019-09-10 17:25:51,698 geoprocessing.raster_calculator(446) INFO 100.0%% complete
2019-09-10 17:25:51,698 geoprocessing.raster_calculator(449) INFO signaling stats worker to terminate
2019-09-10 17:25:51,698 geoprocessing.raster_calculator(451) INFO Waiting for raster stats worker result.
2019-09-10 17:25:51,700 threading.run(754) DEBUG payload is None, terminating
2019-09-10 17:25:51,757 habitat_quality.execute(402) INFO Finished raster calculation on total_degradation
2019-09-10 17:25:51,759 habitat_quality.execute(431) INFO Starting raster calculation on quality_op
2019-09-10 17:25:51,786 geoprocessing.raster_calculator(367) INFO starting stats_worker
2019-09-10 17:25:51,786 geoprocessing.raster_calculator(373) INFO started stats_worker <Thread(Thread-15, started daemon 28648)>
2019-09-10 17:25:56,805 geoprocessing.<lambda>(443) INFO 17.9% complete
2019-09-10 17:26:01,834 geoprocessing.<lambda>(443) INFO 26.6% complete
2019-09-10 17:26:06,848 geoprocessing.<lambda>(443) INFO 34.0% complete
2019-09-10 17:26:11,859 geoprocessing.<lambda>(443) INFO 41.3% complete
2019-09-10 17:26:16,880 geoprocessing.<lambda>(443) INFO 47.6% complete
2019-09-10 17:26:21,914 geoprocessing.<lambda>(443) INFO 54.2% complete
2019-09-10 17:26:26,927 geoprocessing.<lambda>(443) INFO 61.2% complete
2019-09-10 17:26:31,944 geoprocessing.<lambda>(443) INFO 69.1% complete
2019-09-10 17:26:36,953 geoprocessing.<lambda>(443) INFO 76.8% complete
2019-09-10 17:26:41,956 geoprocessing.<lambda>(443) INFO 87.9% complete
2019-09-10 17:26:44,423 geoprocessing.raster_calculator(446) INFO 100.0%% complete
2019-09-10 17:26:44,423 geoprocessing.raster_calculator(449) INFO signaling stats worker to terminate
2019-09-10 17:26:44,424 threading.run(754) DEBUG payload is None, terminating
2019-09-10 17:26:44,424 geoprocessing.raster_calculator(451) INFO Waiting for raster stats worker result.
2019-09-10 17:26:44,648 habitat_quality.execute(441) INFO Finished raster calculation on quality_op
2019-09-10 17:26:44,650 habitat_quality.execute(445) INFO Baseline not provided to compute Rarity
2019-09-10 17:26:44,650 habitat_quality.execute(534) INFO Finished habitat_quality biophysical calculations
2019-09-10 17:26:44,650 model._logged_target(1662) INFO Execution finished
2019-09-10 17:26:44,651 utils.prepare_workspace(121) INFO Elapsed time: 36m 26.7s