Dear partner,
When I try to use Invest 3. 8. 0 with the Habitat quality index，something wrong come. Thank you very much. Running log is behind.
Initializing…
Showing messages with level INFO and higher
2020-03-06 11:16:13,466 utils.prepare_workspace(115) INFO Writing log messages to G:/habitat\InVEST-Habitat-Quality-log-2020-03-06–11_16_13.txt
2020-03-06 11:16:13,476 model._logged_target(1642) Level 100 Starting model with parameters:
Arguments for InVEST natcap.invest.habitat_quality 3.8.0:
half_saturation_constant 0.5
lulc_cur_path G:/生境质量/landuse2015reclass.tif
n_workers -1
results_suffix
sensitivity_table_path G:/threatsnew/sensitivity.csv
threat_raster_folder G:/threatsnew
threats_table_path G:/threatsnew/threats.csv
workspace_dir G:/habitat
2020-03-06 11:16:13,926 usage._log_model(285) WARNING an exception encountered when logging TypeError(‘not a string’)
2020-03-06 11:16:14,716 habitat_quality.execute(366) INFO Starting aligning and resizing land cover and threat rasters
2020-03-06 11:16:16,324 geoprocessing.align_and_resize_raster_stack(752) INFO 1 of 6 aligned: landuse2015reclass_aligned.tif
2020-03-06 11:16:17,832 geoprocessing.align_and_resize_raster_stack(752) INFO 2 of 6 aligned: crop_c_aligned.tif
2020-03-06 11:16:19,363 geoprocessing.align_and_resize_raster_stack(752) INFO 3 of 6 aligned: wat_c_aligned.tif
2020-03-06 11:16:20,921 geoprocessing.align_and_resize_raster_stack(752) INFO 4 of 6 aligned: mine_c_aligned.tif
2020-03-06 11:16:22,493 geoprocessing.align_and_resize_raster_stack(752) INFO 5 of 6 aligned: ru_c_aligned.tif
2020-03-06 11:16:24,178 geoprocessing.align_and_resize_raster_stack(752) INFO 6 of 6 aligned: urb_c_aligned.tif
2020-03-06 11:16:24,178 geoprocessing.align_and_resize_raster_stack(754) INFO aligned all 6 rasters.
2020-03-06 11:16:24,178 habitat_quality.execute(381) INFO Finished aligning and resizing land cover and threat rasters
2020-03-06 11:16:24,179 habitat_quality.execute(402) INFO Preprocessing threat values for G:/habitat\intermediate\crop_c_aligned.tif
2020-03-06 11:16:25,594 habitat_quality.execute(402) INFO Preprocessing threat values for G:/habitat\intermediate\wat_c_aligned.tif
2020-03-06 11:16:27,043 habitat_quality.execute(402) INFO Preprocessing threat values for G:/habitat\intermediate\mine_c_aligned.tif
2020-03-06 11:16:28,584 habitat_quality.execute(402) INFO Preprocessing threat values for G:/habitat\intermediate\ru_c_aligned.tif
2020-03-06 11:16:30,113 habitat_quality.execute(402) INFO Preprocessing threat values for G:/habitat\intermediate\urb_c_aligned.tif
2020-03-06 11:16:31,947 habitat_quality.execute(427) INFO Starting habitat_quality biophysical calculations
2020-03-06 11:16:31,947 habitat_quality.execute(434) INFO Handling Access Shape
2020-03-06 11:16:33,530 habitat_quality.execute(447) INFO No Access Shape Provided, access raster filled with 1s.
2020-03-06 11:16:33,531 habitat_quality.execute(459) INFO Calculating habitat quality for landuse: G:/habitat\intermediate\landuse2015reclass_aligned.tif
2020-03-06 11:16:33,532 habitat_quality.map_raster_to_dict_values(847) INFO Starting map_raster_to_dict_values
2020-03-06 11:16:33,618 geoprocessing.raster_calculator(375) INFO starting stats_worker
2020-03-06 11:16:33,622 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-4, started daemon 16080)>
2020-03-06 11:16:33,647 geoprocessing.raster_calculator(486) INFO Waiting for raster stats worker result.
2020-03-06 11:16:33,648 threading.run(870) WARNING No valid pixels were received, sending None.
2020-03-06 11:16:33,649 model._logged_target(1648) ERROR Exception while executing <function execute at 0x0BA2D738>
Traceback (most recent call last):
File “site-packages\natcap\invest\ui\model.py”, line 1645, in _logged_target
File “site-packages\natcap\invest\habitat_quality.py”, line 466, in execute
File “site-packages\natcap\invest\habitat_quality.py”, line 854, in map_raster_to_dict_values
File “site-packages\pygeoprocessing\geoprocessing.py”, line 1763, in reclassify_raster
File “site-packages\pygeoprocessing\geoprocessing.py”, line 424, in raster_calculator
File “site-packages\pygeoprocessing\geoprocessing.py”, line 1758, in _map_dataset_to_value_op
IndexError: index 14 is out of bounds for axis 0 with size 14
2020-03-06 11:16:33,651 model._logged_target(1651) INFO Execution finished
2020-03-06 11:16:33,658 utils.prepare_workspace(121) INFO Elapsed time: 20.19s
2020-03-06 11:16:33,688 execution.run(78) ERROR Target <function InVESTModel.execute_model.._logged_target at 0x0CEB7B28> failed with exception
Traceback (most recent call last):
File “site-packages\natcap\invest\ui\execution.py”, line 68, in run
File “site-packages\natcap\invest\ui\model.py”, line 1645, in _logged_target
File “site-packages\natcap\invest\habitat_quality.py”, line 466, in execute
File “site-packages\natcap\invest\habitat_quality.py”, line 854, in map_raster_to_dict_values
File “site-packages\pygeoprocessing\geoprocessing.py”, line 1763, in reclassify_raster
File “site-packages\pygeoprocessing\geoprocessing.py”, line 424, in raster_calculator
File “site-packages\pygeoprocessing\geoprocessing.py”, line 1758, in _map_dataset_to_value_op
IndexError: index 14 is out of bounds for axis 0 with size 14
2020-03-06 11:16:33,690 execution.run(83) INFO Execution finished
2020-03-06 11:16:47,879 usage._log_exit_status(233) WARNING an exception encountered when _log_exit_status Remote end closed connection without response