I am running the SDR model and the following error message:
ValueError: The following 1 raster values [-3.4e+38] from “/Volumes/GoogleDrive/[…]/Sediment/intermediate_outputs/churn_dir_not_for_humans/aligned_lulc_baseline_v3.tif” do not have corresponding entries in the value_map: {1.0: 0.27, 2.0: 0.99, 3.0: 0.128, 4.0: 0.99, 5.0: 0.009000000000000001, 6.0: 0.001, 7.0: 0.001, 8.0: 0.002, 9.0: 0.002, 10.0: 0.002, 11.0: 0.02, 12.0: 0.003, 13.0: 0.002, 14.0: 0.175, 15.0: 0.001, 16.0: 1.0, 17.0: 0.003, 18.0: 0.002, 19.0: 0.175, 32001.0: 1.0, 32002.0: 0.9, 32003.0: 0.8, 32004.0: 0.7, 32005.0: 0.6, 2531015.0: 0.006, 2531520.0: 0.075, 2541015.0: 0.006, 2541520.0: 0.075, -3.4000000000000003e+38: 0.0}
When I open that tif in my GIS it indeed initially seems to have this very low value [-3.4e+38] but I cannot find amongst the pixels. When I go to classify the pixels based on their LULC codes this value also disappears.
I can only think that this error related to NoData somewhere. I have checked that all of the input layers overlap and are in the same projection. Any other tips you may have to solve this error would be greatly appreciated.
Sylvia
Run log:
Initializing…
Showing messages with level INFO and higher
2021-01-08 10:56:44,165 utils.prepare_workspace(111) INFO Writing log messages to /Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/2-Analysis/Sediment/InVEST-Sediment-Delivery-Ratio-Model-(SDR)-log-2021-01-08–10_56_44.txt
2021-01-08 10:56:44,254 model._logged_target(1626) Level 100 Starting model with parameters:
Arguments for InVEST natcap.invest.sdr.sdr 3.8.9:
biophysical_table_path /Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/1-Data/GeospatialData/Sediments/Biophysical_table_SDR_CREDDO_2021.csv
dem_path /Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/1-Data/GeospatialData/Sediments/CDEM/DEM.tif
drainage_path
erodibility_path /Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/1-Data/GeospatialData/Sediments/Erodibility_K_CREDDO.tif
erosivity_path /Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/1-Data/GeospatialData/Sediments/Erositivity_CREDDO.tif
ic_0_param 0.9
k_param 3.5
lulc_path /Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/1-Data/GeospatialData/LandUse/land_use_bassinVersant_cl27.tif
n_workers -1
results_suffix _baseline_v3
sdr_max 0.8
threshold_flow_accumulation 1000
watersheds_path /Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/1-Data/GeospatialData/Sediments/Bassin Versant_CREDDO_32198.shp
workspace_dir /Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/2-Analysis/Sediment
2021-01-08 10:56:51,805 geoprocessing.raster_calculator(375) INFO starting stats_worker
2021-01-08 10:56:51,919 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-185, started daemon 123145475821568)>
2021-01-08 10:56:52,418 geoprocessing.raster_calculator(454) INFO 100.0%% complete
2021-01-08 10:56:52,420 geoprocessing.raster_calculator(457) INFO signaling stats worker to terminate
2021-01-08 10:56:52,423 geoprocessing.raster_calculator(459) INFO Waiting for raster stats worker result.
2021-01-08 10:56:53,137 geoprocessing.align_and_resize_raster_stack(752) INFO 1 of 4 aligned: aligned_dem_baseline_v3.tif
2021-01-08 10:56:56,533 geoprocessing.raster_calculator(375) INFO starting stats_worker
2021-01-08 10:56:56,535 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-186, started daemon 123145475821568)>
2021-01-08 10:56:57,094 geoprocessing.raster_calculator(454) INFO 100.0%% complete
2021-01-08 10:56:57,099 geoprocessing.raster_calculator(457) INFO signaling stats worker to terminate
2021-01-08 10:56:57,100 geoprocessing.raster_calculator(459) INFO Waiting for raster stats worker result.
2021-01-08 10:56:57,962 geoprocessing.align_and_resize_raster_stack(752) INFO 2 of 4 aligned: aligned_lulc_baseline_v3.tif
2021-01-08 10:57:02,452 geoprocessing.raster_calculator(375) INFO starting stats_worker
2021-01-08 10:57:02,457 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-187, started daemon 123145475821568)>
2021-01-08 10:57:04,048 geoprocessing.raster_calculator(454) INFO 100.0%% complete
2021-01-08 10:57:04,050 geoprocessing.raster_calculator(457) INFO signaling stats worker to terminate
2021-01-08 10:57:04,054 geoprocessing.raster_calculator(459) INFO Waiting for raster stats worker result.
2021-01-08 10:57:07,525 geoprocessing.align_and_resize_raster_stack(752) INFO 3 of 4 aligned: aligned_erosivity_baseline_v3.tif
2021-01-08 10:57:13,128 geoprocessing.raster_calculator(375) INFO starting stats_worker
2021-01-08 10:57:13,134 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-188, started daemon 123145475821568)>
2021-01-08 10:57:14,253 geoprocessing.raster_calculator(454) INFO 100.0%% complete
2021-01-08 10:57:14,254 geoprocessing.raster_calculator(457) INFO signaling stats worker to terminate
2021-01-08 10:57:14,256 geoprocessing.raster_calculator(459) INFO Waiting for raster stats worker result.
2021-01-08 10:57:15,423 geoprocessing.align_and_resize_raster_stack(752) INFO 4 of 4 aligned: aligned_erodibility_baseline_v3.tif
2021-01-08 10:57:15,425 geoprocessing.align_and_resize_raster_stack(754) INFO aligned all 4 rasters.
2021-01-08 10:57:21,385 Task._call(1174) INFO 38.1% complete
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2021-01-08 10:57:31,386 geoprocessing.raster_calculator(375) INFO starting stats_worker
2021-01-08 10:57:31,388 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-189, started daemon 123145475821568)>
2021-01-08 10:57:32,048 geoprocessing.raster_calculator(454) INFO 100.0%% complete
2021-01-08 10:57:32,059 geoprocessing.raster_calculator(457) INFO signaling stats worker to terminate
2021-01-08 10:57:32,060 geoprocessing.raster_calculator(459) INFO Waiting for raster stats worker result.
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2021-01-08 10:57:55,000 Task._call(1174) INFO mfd flow accum 4.9% complete
2021-01-08 10:58:01,000 Task._call(1174) INFO mfd flow accum 23.2% complete
2021-01-08 10:58:04,192 Task._call(1174) INFO 100.0% complete
2021-01-08 10:58:04,985 geoprocessing.raster_calculator(375) INFO starting stats_worker
2021-01-08 10:58:04,987 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-190, started daemon 123145475821568)>
2021-01-08 10:58:09,993 geoprocessing.(451) INFO 94.5% complete
2021-01-08 10:58:10,663 geoprocessing.raster_calculator(454) INFO 100.0%% complete
2021-01-08 10:58:10,714 geoprocessing.raster_calculator(457) INFO signaling stats worker to terminate
2021-01-08 10:58:10,717 geoprocessing.raster_calculator(459) INFO Waiting for raster stats worker result.
2021-01-08 10:58:18,506 Task._call(1174) INFO filter out incomplete divergent streams
2021-01-08 10:58:18,799 Task._call(1174) INFO 100.0% complete
2021-01-08 10:58:19,007 geoprocessing.raster_calculator(375) INFO starting stats_worker
2021-01-08 10:58:19,009 geoprocessing.raster_calculator(381) INFO started stats_worker <Thread(Thread-191, started daemon 123145475821568)>
2021-01-08 10:58:19,199 geoprocessing.raster_calculator(486) INFO Waiting for raster stats worker result.
2021-01-08 10:58:19,202 threading.run(870) WARNING No valid pixels were received, sending None.
2021-01-08 10:58:19,204 Task.add_task(731) ERROR Something went wrong when adding task calculate W (9), terminating taskgraph.
Traceback (most recent call last):
File “site-packages/taskgraph/Task.py”, line 697, in add_task
File “site-packages/taskgraph/Task.py”, line 1174, in _call
File “site-packages/natcap/invest/sdr/sdr.py”, line 990, in _calculate_w
File “site-packages/pygeoprocessing/geoprocessing.py”, line 1763, in reclassify_raster
File “site-packages/pygeoprocessing/geoprocessing.py”, line 424, in raster_calculator
File “site-packages/pygeoprocessing/geoprocessing.py”, line 1756, in _map_dataset_to_value_op
ValueError: The following 1 raster values [-3.4e+38] from “/Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/2-Analysis/Sediment/intermediate_outputs/churn_dir_not_for_humans/aligned_lulc_baseline_v3.tif” do not have corresponding entries in the value_map: {1.0: 0.27, 2.0: 0.99, 3.0: 0.128, 4.0: 0.99, 5.0: 0.009000000000000001, 6.0: 0.001, 7.0: 0.001, 8.0: 0.002, 9.0: 0.002, 10.0: 0.002, 11.0: 0.02, 12.0: 0.003, 13.0: 0.002, 14.0: 0.175, 15.0: 0.001, 16.0: 1.0, 17.0: 0.003, 18.0: 0.002, 19.0: 0.175, 32001.0: 1.0, 32002.0: 0.9, 32003.0: 0.8, 32004.0: 0.7, 32005.0: 0.6, 2531015.0: 0.006, 2531520.0: 0.075, 2541015.0: 0.006, 2541520.0: 0.075, -3.4000000000000003e+38: 0.0}
2021-01-08 10:58:19,210 model._logged_target(1632) ERROR Exception while executing <function execute at 0x186e67dd0>
Traceback (most recent call last):
File “site-packages/natcap/invest/ui/model.py”, line 1629, in _logged_target
File “site-packages/natcap/invest/sdr/sdr.py”, line 466, in execute
File “site-packages/taskgraph/Task.py”, line 697, in add_task
File “site-packages/taskgraph/Task.py”, line 1174, in _call
File “site-packages/natcap/invest/sdr/sdr.py”, line 990, in _calculate_w
File “site-packages/pygeoprocessing/geoprocessing.py”, line 1763, in reclassify_raster
File “site-packages/pygeoprocessing/geoprocessing.py”, line 424, in raster_calculator
File “site-packages/pygeoprocessing/geoprocessing.py”, line 1756, in _map_dataset_to_value_op
ValueError: The following 1 raster values [-3.4e+38] from “/Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/2-Analysis/Sediment/intermediate_outputs/churn_dir_not_for_humans/aligned_lulc_baseline_v3.tif” do not have corresponding entries in the value_map: {1.0: 0.27, 2.0: 0.99, 3.0: 0.128, 4.0: 0.99, 5.0: 0.009000000000000001, 6.0: 0.001, 7.0: 0.001, 8.0: 0.002, 9.0: 0.002, 10.0: 0.002, 11.0: 0.02, 12.0: 0.003, 13.0: 0.002, 14.0: 0.175, 15.0: 0.001, 16.0: 1.0, 17.0: 0.003, 18.0: 0.002, 19.0: 0.175, 32001.0: 1.0, 32002.0: 0.9, 32003.0: 0.8, 32004.0: 0.7, 32005.0: 0.6, 2531015.0: 0.006, 2531520.0: 0.075, 2541015.0: 0.006, 2541520.0: 0.075, -3.4000000000000003e+38: 0.0}
2021-01-08 10:58:19,220 model._logged_target(1635) INFO Execution finished
2021-01-08 10:58:19,234 utils.prepare_workspace(117) INFO Elapsed time: 1m 35.06s
2021-01-08 10:58:19,278 execution.run(78) ERROR Target <function InVESTModel.execute_model.._logged_target at 0x19a31d560> failed with exception
Traceback (most recent call last):
File “site-packages/natcap/invest/ui/execution.py”, line 68, in run
File “site-packages/natcap/invest/ui/model.py”, line 1629, in _logged_target
File “site-packages/natcap/invest/sdr/sdr.py”, line 466, in execute
File “site-packages/taskgraph/Task.py”, line 697, in add_task
File “site-packages/taskgraph/Task.py”, line 1174, in _call
File “site-packages/natcap/invest/sdr/sdr.py”, line 990, in _calculate_w
File “site-packages/pygeoprocessing/geoprocessing.py”, line 1763, in reclassify_raster
File “site-packages/pygeoprocessing/geoprocessing.py”, line 424, in raster_calculator
File “site-packages/pygeoprocessing/geoprocessing.py”, line 1756, in _map_dataset_to_value_op
ValueError: The following 1 raster values [-3.4e+38] from “/Volumes/GoogleDrive/.shortcut-targets-by-id/137PT8GtRF-lifVRYGLBn5MDL3XCv3x6f/1 - Drive Eco2Urb/Clients-Projects/Projets en cours/CREDDO/4-Analysis/2-Analysis/Sediment/intermediate_outputs/churn_dir_not_for_humans/aligned_lulc_baseline_v3.tif” do not have corresponding entries in the value_map: {1.0: 0.27, 2.0: 0.99, 3.0: 0.128, 4.0: 0.99, 5.0: 0.009000000000000001, 6.0: 0.001, 7.0: 0.001, 8.0: 0.002, 9.0: 0.002, 10.0: 0.002, 11.0: 0.02, 12.0: 0.003, 13.0: 0.002, 14.0: 0.175, 15.0: 0.001, 16.0: 1.0, 17.0: 0.003, 18.0: 0.002, 19.0: 0.175, 32001.0: 1.0, 32002.0: 0.9, 32003.0: 0.8, 32004.0: 0.7, 32005.0: 0.6, 2531015.0: 0.006, 2531520.0: 0.075, 2541015.0: 0.006, 2541520.0: 0.075, -3.4000000000000003e+38: 0.0}
2021-01-08 10:58:19,285 execution.run(83) INFO Execution finished